BAC Information

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BAC

Clone NameMSMg01-346E14
Chromosome1 (Build37)
Map Location 54,162,139 - 54,162,571
singlet/doubletsinglet
Overlap geneHecw2
Upstream gene1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b
Downstream gene4930511H11Rik, Gtf3c3, EG627915, D230012E17Rik, Ankrd44, Sf3b1, Coq10b, Hspd1, Hspe1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346E14.T7 (MSMg01no346_e14.b1)MSMg01-346E14.TJ (MSMg01no346_e14.g1)
ACCAG458909AG458910
length771772
length of high quality
(start - end)		423 (38 - 460)433 (67 - 499)
definitionCHROMAT_FILE: MSMg01no346_e14.b1 PHD_FILE: MSMg01no346_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:56 2005CHROMAT_FILE: MSMg01no346_e14.g1 PHD_FILE: MSMg01no346_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCA
CCTGACAAATACCGAATGGCTGAGAAACACCTGAAAAAATGTTCAGCATC
CTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGCGATTCTATCTCA
CACCAGTCAGAATGGCTAAGATCAAAAATTCAATTGACAGCAGATGCTGG
CGAGGATGTGGAGAAAGAGGAACACTCCTTCACTGTTGGTGGGATTGCAA
GCTTGTACAACCACTCTGGAAATCAGTCTAGCGGTTTCTCAGAAAATTGG
ACATGGTACTACCAGATGATCCCGCAATACCTCTCCTGGGCATATATCCA
GAAGATGTTCCAACTAGTAAGAAAGAAACATCCTCCACTATGTTCATAGC
AGCCTTATTTATAATAGCCAGAAGCTGGAAAGTACCCAGATGCCCCTCAA
CAGAGGAATGGATTATAAAAAAATGTGGTACATTTACACAATGGAGTACT
ACTCAGCTATTTAAAAGAACGAATTTATGAAATTCCCTAAGTCAAAAGAA
GGAACCTGGAGGGTTTTATTCCGACGGTAGGAACCCCCCCCCAAAAAAAT
TCCATTGATTTGTGACCCCCGGAAAAGGGAAATTTATCCCCCAAACTTAT
AAACCCCCCAAAAATATGTTCACATATGNATAAAACTGTAACCCCCTAAA
AACCCAATATTATTTTGGTGCTCTTCGCCCCTCTTAAATTGTGAAATAAT
CCCCCCTTTTGGGGTCGCCAG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAGGGCAGCCAGAGCTATAAACAGAGACCCTGTC
TCAAAAAGCCAAAAGAAAAAAAGAACATGGTGTCTGTTGTTTTCTTAGTT
TTATTGATCATCTGCACTGTGTCTGGTGTCATGTTCTGGCTTCCATACAA
TGATCTCGTTTAACAGTCCCAGCATTGCTGGTAGAAGAGCTAACTCACTG
TGTGCTGTGGGAGGGAAGGTTAAGTGATTGCTGGGGAGACCCTAGTGCAG
ATGCAGAGCAATGTTGGGTAATCTCAGGGTCCTGACACCATTCTTTCCCA
TGTGCTGAGCTGCATTAAATCCCCAGTGGAGCGAGTGCCTTGAATATAGG
TACTAGCAAGGTATCTGTCAGATCAATAAACACGAATCACCACAGCAGTC
ACCGAAAGAGCTCTGCATGAGTTCCCCTGAAAACAGATCTGTGTGTCAAA
GATGTCCTGGCATGGCATGTGTGTAAGGGTTTGTTGAATTTTTGTCCGCT
TCCAGCAATAAATCCCCCCTCCAACTGTAAGTCTGTATTATAGTTTATTA
TTTCACTTTTTTCACCCCCCCCCCCCGCACAAACTTGTACTGTTATTCCC
CCTGTGGAGCTTCATGTTTACATTCCTTATCTCTTCCTTATTTTTTAACT
ACTCTTTTTTATCCTCTTTCCTTATATTCCTTTCCTTTCCCCACCCCTTT
TTTTCACCACTCCACATCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_e14.g1 MSMg01no346_e14.g1 CHROMAT_FILE:
MSMg01no346_e14.g1 PHD_FILE: MSMg01no346_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:57 2005
         (433 letters)



>mm_chr1_54161891_54162723
          Length = 833

 Score =  783 bits (405), Expect = 0.0
 Identities = 426/433 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagggcagccagagctataaacagagaccctgtctcaaaaagccaaaagaaaaaaagaac 60
           |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 681 cagggcagccagagctataagcagagaccctgtctcaaaaagacaaaagaaaaaaagaac 622

                                                                       
Query: 61  atggtgtctgttgttttcttagttttattgatcatctgcactgtgtctggtgtcatgttc 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 621 atggtgtctgttgttttcttagttttattgatcatctgcagtgtgtctggtgtcatgttc 562

                                                                       
Query: 121 tggcttccatacaatgatctcgtttaacagtcccagcattgctggtagaagagctaactc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 tggcttccatacaatgatctcgtttaacagtcccagcattgctggtagaagagcgaactc 502

                                                                       
Query: 181 actgtgtgctgtgggagggaaggttaagtgattgctggggagaccctagtgcagatgcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actgtgtgctgtgggagggaaggttaagtgattgctggggagaccctagtgcagatgcag 442

                                                                       
Query: 241 agcaatgttgggtaatctcagggtcctgacaccattctttcccatgtgctgagctgcatt 300
           ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcaatggtaggtaatctcagggtcctgacaccattctttcccatgtgctgagctgcatt 382

                                                                       
Query: 301 aaatccccagtggagcgagtgccttgaatataggtactagcaaggtatctgtcagatcaa 360
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatccccagtggaacgagtgccttgaatataggtactagcaaggtatctgtcagatcaa 322

                                                                       
Query: 361 taaacacgaatcaccacagcagtcaccgaaagagctctgcatgagttcccctgaaaacag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaacacgaatcaccacagcagtcaccgaaagagctctgcatgagttcccctgaaaacag 262

                        
Query: 421 atctgtgtgtcaa 433
           |||||||||||||
Sbjct: 261 atctgtgtgtcaa 249


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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