BAC Information

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BAC

Clone NameMSMg01-346G11
Chromosome1 (Build37)
Map Location 4,187,923 - 4,188,183
singlet/doubletsinglet
Overlap genenone
Upstream geneXkr4, LOC100038975, LOC664792
Downstream geneLOC619785, Rp1h, Sox17, LOC664830, LOC664838, LOC664853, LOC619596, EG619980, LOC100039121, LOC620009, Mrpl15, Lypla1, Tcea1, LOC619829, Rgs20, Atp6v1h
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346G11.T7 (MSMg01no346_g11.b1)MSMg01-346G11.TJ (MSMg01no346_g11.g1)
ACCAG458999AG459000
length709733
length of high quality
(start - end)		267 (38 - 304)560 (68 - 627)
definitionCHROMAT_FILE: MSMg01no346_g11.b1 PHD_FILE: MSMg01no346_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:05 2005CHROMAT_FILE: MSMg01no346_g11.g1 PHD_FILE: MSMg01no346_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTA
TATCGCCTACTCACTGCTCTGTATTCCACGCAATAGCCTAACATCACAAT
ATGAATCAAATGACTTATTCAAGATGTTTTCTTTACCGATTCTAAATGAG
AGCTACTTGAGTAATCTGCTGCTTTGCCTTTCTCAAAAGAAGAAACAGCC
TAAAGCATCATTCAAAGAGAACTTCACTATATCTTACTAGGATATGAAAA
CCAATGAATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GNNNNTTTTTTTTTTTNNNTNNNNTTTTNNTNTNNTTTTTTTTTTTTTTT
TTCTCTTTTTNNTTTTTTTTNTTTTTTTTNCTTNCTTTTCCTTCCTCCTT
CCCTTCTTTTCTTCTCTCTTCTCTCCTTTTCCTCTCCCCTTTCTTCCTTT
TTTTTCTTTTTTTCCTCCCCCCCCTTTTTCTCTTCCTCCCCCCTTTTTTT
CTCCTTTTTCTTTTCCTTTTCCCTTCTCCCTCCCCTCCTCTTTCTTTTTT
TTCTTTTCTCCTTTCTCCCTTTTTTCTTTCTTCTTTTTCCCCTCTTCTTT
TTCTTCCTTTCCCCTCTCCTTCTTTTCTTCTCCTTCTCTCTCCCTCCCCT
CTCCTTTCCCTCTCTTCCCCCTTTTTTTTCTCCCTTTTCCCCTCCCCTTT
TTTCCCTCC

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTGTTTAGATCTGAGCCCCATTTTTAATGGGG
TTATTTAATTTTCTGGAGTCCACCTTCTTGAGTTCTGTATATATATTGGA
TATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTG
TTGGTGGCCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTATAGAAGCTT
TGCGATTTTATGAGGTCCCATATGTGGATTCTCGATCTTACAGCACAAGC
CTGTTCTATTCAGGAATTTTCCCCCTGTGCCCATATCTTTGAGGCTTTTC
CCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTC
CTTGATCCACTTAGATTTGATCTTAGTACAAGGAGATAGGAATGGATCAA
TTCACATTCTTCTACATGTTAACTGCCAGTTGTGCCAGCACCATTTGTTG
AAAATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAAAT
CAAGTGACCATAGGTGTGTGGGTTCATTTCAGGGTCTTCAATTCTATTCC
ATTGGNCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACA
ATTGCTCTGTACTACAGCTTTTTGTCAGGCATATTGATTCCACCAGAGGG
TCTTTTATCCTTGAGAAGAGTTTTTCCCATCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_g11.b1 MSMg01no346_g11.b1 CHROMAT_FILE:
MSMg01no346_g11.b1 PHD_FILE: MSMg01no346_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:05 2005
         (267 letters)



>mm_chr1_4187720_4188386
          Length = 667

 Score =  482 bits (249), Expect = e-140
 Identities = 258/261 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctatatcgcctactcactgctctgtattccacgcaatagcctaacatcacaat 63
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctataaagcctactcactgctctgtattccacgcaatagcctaacatcacaat 263

                                                                       
Query: 64  atgaatcaaatgacttattcaagatgttttctttaccgattctaaatgagagctacttga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atgaatcaaatgacttattcaagatgttttctttaccgattctaaatgagagctacttga 323

                                                                       
Query: 124 gtaatctgctgctttgcctttctcaaaagaagaaacagcctaaagcatcattcaaagaga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtaatctgctgctttgcctttctcaaaagaagaaacagcctaaagcatcattcaaagaga 383

                                                                       
Query: 184 acttcactatatcttactaggatatgaaaaccaatgaattgtgtgtgtgtgtgtgtgtgt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acttcactatatcttactaggatatgaaaaccaatgaattgtgtgtgtgtgtgtgtgtgt 443

                                
Query: 244 gtgtgtgtgtgtgtgtgtgtg 264
           |||||||| ||||||||||||
Sbjct: 444 gtgtgtgtatgtgtgtgtgtg 464


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 667
Length adjustment: 9
Effective length of query: 258
Effective length of database: 658
Effective search space:   169764
Effective search space used:   169764
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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