BAC Information

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BAC

Clone NameMSMg01-346H15
Chromosome1 (Build37)
Map Location 126,889,790 - 127,057,063
singlet/doubletdoublet
Overlap genenone
Upstream geneDpp10, LOC666998
Downstream geneActr3, Slc35f5, Lypd1, E030049G20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346H15.T7 (MSMg01no346_h15.b1)MSMg01-346H15.TJ (MSMg01no346_h15.g1)
ACCAG459052AG459053
length743773
length of high quality
(start - end)		508 (37 - 544)145 (67 - 211)
definitionCHROMAT_FILE: MSMg01no346_h15.b1 PHD_FILE: MSMg01no346_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:11 2005CHROMAT_FILE: MSMg01no346_h15.g1 PHD_FILE: MSMg01no346_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,889,790 - 126,890,277)(127,056,919 - 127,057,063)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAAA
GATGCCGGCTCTAATGTCAGTGAAGAAATTGACTTGTTGGTGAGAGCAAT
GGCCAGCAGGCAGAGAGCTTCCTTCTTCCATGCCTACTATACAGGATGTC
ACTAGAAGGTATGGCCCAGATCAAAGGTAGATCTTCCCATCTTAAAAGAT
CCAGATTAAAAGTGTGTCTTCAACTGATTTAATTAAGAATGAGGTCTTCC
ACAGGCCTACCCAGCTACTTGAGTTCTAGCTAATTCCAGATATAGTCAAG
TTAGCAACCAAGAATAGATATCATATATCTCTCTGATGTATATGCACCAA
CAACATCCCAGCAACTTAGAACCTTTATTATATATAGCAGGAATGGTGAG
GAGGCCTGTCAGTTCACTTGGGAAGGTCATCTCTGTAAGGAGCAGTCTCA
GTTTTTAAGAGGAGGAAGCTTCAATCCATACTCCTTTCACACATGGTTAT
AGCTAAAGGTGAAGCTTTGTCAATATTCTTAGTCAGAGAAGAGGGAGACT
TTGCATTCTTCAGATTACTCATGGGAATTACAGGTCCTTCCCTGCCACTG
GTGCTCGTGACAGGGCCATGTTCATGTCCACAGGATTAATTCCCCCAGTA
CAACCCCTTAGAATTCCCCAAACTTTGTTTCCTGTGGATGAACTGGGATT
GTAACTTCGGTGGTTAGGGTTCATAGGGAACTTTAGTTAGGCN

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACAGTAACTCACTTTAATGATTGATATTTAATGT
GAATAAAATTAACATTGTTAGAGATGGTGAGTTTGATTATCTAAAATCTG
ATTTTTTTGTGTGTTATATTTCTGTGTGTATGTGTTTGTGTGTGTGTGTG
TGTGTGTGTGTCTNCNCCCCCNCCCCCCCCTCCCCCTCTTTTCTTCCCTC
CTTTTTCCTCCCTCCTCTCCTTCCTTTCTTCTCCCCCCCCCCCCCNCCCT
CCTCTTTTTTTTTTTNCNNCCCCCCCCTTTTTTCCCTTTTCCTCTTTTTT
TTCCCCCCTCTTCCCCCCCCCCTCCCCCTTTTCTTTCTTTTTTTTCCCCT
TTCTCCCCCCCCCTCCTTTTTTCCTCTTCCTCTCCCCTTCTTTTCTTTTC
TCCTCTCTTCTTTTTCCTTTTCCCCTTTTTTCCCTCTCCTTTTTCTCTTC
TTTTCCCTTTTCCCTCCCCCTTTTTTCCCTTTTTCCTCCCTTTTCTTTTT
TTTTCTTCTCTCTCTTCCCTCCTTTCCCTTTTCCTTCCCTTTTTTTTTCC
CCCCTTCTCCCCCTCCTTCTTTCCCTCCCTCTTTTTCCTTCCCTCCTTTT
TCCTTTCTTCCCCTTTTTCCTCCTTTTTTCCTCCCCTTTTCCTCTCTTCT
TTTCCTCTCTCTCTTTCTCCCCCTCCCCCTTTTCTCCTCATTCCGCCTTC
CCTCTTTTCCCCCTCTTCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_h15.b1 MSMg01no346_h15.b1 CHROMAT_FILE:
MSMg01no346_h15.b1 PHD_FILE: MSMg01no346_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:11 2005
         (508 letters)



>mm_chr1_126889570_126890477
          Length = 908

 Score =  905 bits (468), Expect = 0.0
 Identities = 483/488 (98%)
 Strand = Plus / Plus

                                                                       
Query: 21  ggctctaatgtcagtgaagaaattgacttgttggtgagagcaatggccagcaggcagaga 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 ggctctaatgtcagtgaagaaattgacttgttggtgagagcaatggccagcaggcagaga 280

                                                                       
Query: 81  gcttccttcttccatgcctactatacaggatgtcactagaaggtatggcccagatcaaag 140
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gcttccttcttccatgtctactatacaggatgtcactagaaggtatggcccagatcaaag 340

                                                                       
Query: 141 gtagatcttcccatcttaaaagatccagattaaaagtgtgtcttcaactgatttaattaa 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gtagatcttcccatcttaaaagatccagattaaaagtgtgtcttcaactgatttaattaa 400

                                                                       
Query: 201 gaatgaggtcttccacaggcctacccagctacttgagttctagctaattccagatatagt 260
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gaatgaggtcttccacgggcctacccagctacttgagttctagctaattccagatatagt 460

                                                                       
Query: 261 caagttagcaaccaagaatagatatcatatatctctctgatgtatatgcaccaacaacat 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 caagttagcaaccaagaatagatatcatatatctctctgatgtatatgcaccaacaacat 520

                                                                       
Query: 321 cccagcaacttagaacctttattatatatagcaggaatggtgaggaggcctgtcagttca 380
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 521 cccagcaacttagaacctttattaaatatagcaggaatggtgaggaggcctgtcagttca 580

                                                                       
Query: 381 cttgggaaggtcatctctgtaaggagcagtctcagtttttaagaggaggaagcttcaatc 440
           |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 581 cttgggaaggtcatctctgtaaggagcagtctcagtttgtaagaggaggaagtttcaatc 640

                                                                       
Query: 441 catactcctttcacacatggttatagctaaaggtgaagctttgtcaatattcttagtcag 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 catactcctttcacacatggttatagctaaaggtgaagctttgtcaatattcttagtcag 700

                   
Query: 501 agaagagg 508
           ||||||||
Sbjct: 701 agaagagg 708


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no346_h15.g1 MSMg01no346_h15.g1 CHROMAT_FILE:
MSMg01no346_h15.g1 PHD_FILE: MSMg01no346_h15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:11 2005
         (145 letters)



>mm_chr1_127056758_127057302
          Length = 545

 Score =  265 bits (137), Expect = 8e-76
 Identities = 143/145 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagtaactcactttaatgattgatatttaatgtgaataaaattaacattgttagagatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 acagtaactcactttaatgattgatatttaatgtgaataaaattaacattgttagagatg 247

                                                                       
Query: 61  gtgagtttgattatctaaaatctgatttttttgtgtgttatatttctgtgtgtatgtgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 246 gtgagtttgattatctaaaatctgatttttttgtgtgttatatttctgtgtgtatgtgtg 187

                                    
Query: 121 tgtgtgtgtgtgtgtgtgtgtgtgt 145
           ||||||||||||||||||| |||||
Sbjct: 186 tgtgtgtgtgtgtgtgtgtttgtgt 162


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 145
Length of database: 545
Length adjustment: 8
Effective length of query: 137
Effective length of database: 537
Effective search space:    73569
Effective search space used:    73569
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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