Query= MSMg01no346_k09.b1 MSMg01no346_k09.b1 CHROMAT_FILE:
MSMg01no346_k09.b1 PHD_FILE: MSMg01no346_k09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:24 2005
(647 letters)
>mm_chr1_181167665_181168707
Length = 1043
Score = 1104 bits (571), Expect = 0.0
Identities = 624/647 (96%), Gaps = 12/647 (1%)
Strand = Plus / Plus
Query: 5 gaattccaaatta---ccagcatgtgttgttgaatgcctgggaagggagagccacaggaa 61
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaa--aaaaccagcatgtgttgttgaatgcctgggaagggagagccacaggaa 262
Query: 62 ggaaaggaagagtggacgaaaaggaagcccagtctcttgatttcacacacatgcaggtac 121
||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||
Sbjct: 263 ggaaaggaagagtggacgaaaaggaagtccagtctctcgatctcacacacatgcaggtac 322
Query: 122 agtcacaagagatgccccgaaattcctgaaaatgactctcctgcggtcaaatgacaaact 181
||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 323 agtcacaagagatgccctgaaagtcctgaaagtgactctcctgcggtcaaatgacaaact 382
Query: 182 gtcagggcctgaacatccatcacacttcaaagctgagtcacaaattatggcatgttagtg 241
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 383 gtaagggcctgaacatccatcacacttcaaaggtgagtcacaaattatggcatgttagtg 442
Query: 242 caatggccccaatcgccaactgattaaaggccaagtcacattctcctgaagaacatgtct 301
||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 443 caatggccccaatcgccaactgattaaaggccaagtc------tcctgaagaacatgtct 496
Query: 302 tgtagatctcttacttgtaaatcctaactttgagtggttagttattcagatcagcc-aac 360
||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 497 tgtagatctcttatttgtaaatcctaactctgagtggttagttattcagatcagcccaac 556
Query: 361 tttagggtgccactgaaacctcagtgaccaaattcacaatggaagcgatgagtgaacagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tttagggtgccactgaaacctcagtgaccaaattcacaatggaagcgatgagtgaacagg 616
Query: 421 ccaggcccagctaatgccctaaggacacaaagcaagcacgccccctgctgcccagaaata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ccaggcccagctaatgccctaaggacacaaagcaagcacgccccctgctgcccagaaata 676
Query: 481 agtagaggcgggacaccgctgcacttttcttctttcctgccctaatcttctaggccaata 540
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 agtagaagcgggacaccgctgcacttttcttctttcctgccctaatcttctaggccaata 736
Query: 541 aagaggaaataacttaaatcatctctagagctcaaagccacggaaatccaaaattctgaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 aagaggaaataacttaaatcatctctagagctcaaagccacggaaatccaaaattctgaa 796
Query: 601 cgagaacacctgtcagataattgaagctgaatgtgttcaaagcactc 647
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 cgagaacacctgtcagataattgaagctgaatgtgttcaaagcactc 843
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1043
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1033
Effective search space: 658021
Effective search space used: 658021
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no346_k09.g1 MSMg01no346_k09.g1 CHROMAT_FILE:
MSMg01no346_k09.g1 PHD_FILE: MSMg01no346_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:24 2005
(448 letters)
>mm_chr1_181344805_181345652
Length = 848
Score = 810 bits (419), Expect = 0.0
Identities = 428/431 (99%)
Strand = Plus / Minus
Query: 1 tactgcagattttgacttccttttctcatctgaaacccaagtcttctgctgtttttggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tactgcagattttgacttccttttctcatctgaaacccaagtcttctgctgtttttggct 572
Query: 61 cttaatgcaacacttgtttttccttgatcttccatggcccctttgtacttgttgtatagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 cttaatgcaacacttgtttttccttgatcttccatggcccctttgtacttgttgtatagc 512
Query: 121 attgttaattttgatctttgagaacagaaaacatcccagccagtgttgtgaacaaactta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 attgttaattttgatctttgagaacagaaaacatcccagccagtgttgtgaacaaactta 452
Query: 181 attgtgttcttggttggcagtggagggagaatataggaaagttggccatcctttgagaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 attgtgttcttggttggcagtggagggagaatataggaaagttggccatcctttgagaaa 392
Query: 241 ctggtggacatggaagtccagtgtgccattaaagagcccaactaaggtgagggaggatag 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 391 ctggtggacatggaagtccagtgtgccattaaagggcccaactaaggtgagggaggatag 332
Query: 301 tgtcagtgtttctcagtgtctttgcacacggagttgcttagtagactcatgggtgggctt 360
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tgccagtgtttcttagtgtctttgcacacggagttgcttagtagactcatgggtgggctt 272
Query: 361 atatttataagatttatgctgagtccaagcagcaggtctgagaaaaatactgttttaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 atatttataagatttatgctgagtccaagcagcaggtctgagaaaaatactgttttaaaa 212
Query: 421 accgtattttt 431
|||||||||||
Sbjct: 211 accgtattttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space: 367044
Effective search space used: 367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
