GCCGCTATACGACTCACTATTTCCAGAGGATCCGCGGAATTCAAAGCTAT
CCTGGGCTACAGAGCCAGTTCCAGGACAGCCAGGGCTACACAGTCAAATC
CTATATTGTTCCTTATAAATTTCTCTACTGGGGGAAACAGTCACATTTTT
GTTCTCATTTTTAAACACTCCAAACTATTACAATCCTGTCTAAGACTATA
AACACACACACACACACACACACACACACACACACACACACACACATTTT
CCCCATTTCTAAGACATGCCATTTGAAATTCCCAAAGTTCACAACCGGTT
GATGTGACTTATCTCCTGTCACAGAGTTGTAGATGTTCTCTTGAGTTAGG
GTTTAGGACTGGCTTGGTCAATTAAATGGGTTTTCCATTTTCTCCATGCC
ATTTCTGATAATTTTCCATTTATTGTATGACAAAAGAGGGTCTTCTGTAG
CTCCAGCTCTCTTGGAATTGGCTATGTAACCAAGGAACACATTGAACTTC
AGGCCCTATTTCTTTATCCTTCCAAATGCTGAGATCACGGCTATATTGCC
CCTGTGCCAGTTTTAGGTGGCAGGACCCTGCTCATGCTACATTGGTCAGC
ATTCCACGAACTAACCAACATCCCCTTCTTAACCTTTCTGTTTTTGTTAA
GGAAACCATCTTATTCTTCATGGCGACGCCACACCCCCGTTTTTCCTAAT
TGTTTTTTCCATTTTTTTTTCCTAACCATTTGTTTTGCTGTTTTTGTATT
CGT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTCAGAATACTGACTTTGTGCTGCAGTCTTTTCCCTTTTTT
TCCTGTGGTGCATATAAGGGAAGGAGGAGTGTCACACATGCCAGGCAAGC
ACACGTGCTGCTGCTCAGTTTTCGGTCAACTTGACACATCAACCTACCTG
AGAACTTAAAATGTAGAATTACCTCCATCAGATTGGCCAGTGGGCATGTC
TACAGGGAATTAATTATTGATGTGGGAGGATCTAGCCTACTTTGCACAGT
GCCACCTCTGGGCAGGTACATGGTCCTGGAATATATAAAAAAGCAAGCTA
AGCATGCTTCCAGTTATAGGCCAGGAAGCAAATCCCCCCCTCCCCCACCC
CCATGGCCTGTGCTTAGTCCCTGTCTCCAGAATCCTGTCTTGAGCTCCTG
GCCTGGATTCTCTTGAAGATGAACTGCAACCCCTTCCTCCCCAAGTTGAA
CAGAAAGGGAACAAGAATAGCATCCTACTGCTGCTGGCATCTCTGAGGAT
AGGTTCATTATTCAGACTATGATTTGGATTAGTGCGTTTTTTTTTTCCAT
TCTTCACCTGCATGATACAGTCTTCCCTCATCGTATAAATGCTTCATATA
TCTCCAATATAATCATTTAACCAAGGCTTTGATACATATTCCCTTGAAAA
AACACGAACCTTTTCCTCCTTACTTTTATCCGCTTTGTTTACCCCGCTGC
CCTACACC

Query= MSMg01no346_o18.b1 MSMg01no346_o18.b1 CHROMAT_FILE:
MSMg01no346_o18.b1 PHD_FILE: MSMg01no346_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:44 2005
         (512 letters)



>mm_chr1_51318735_51319646
          Length = 912

 Score =  795 bits (411), Expect = 0.0
 Identities = 468/493 (94%), Gaps = 14/493 (2%)
 Strand = Plus / Minus

                                                                       
Query: 29  gaattcaaagctatcctgggctacagagccagttccaggacagccagggctacacagtca 88
           |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 gaattcaaggctagcctgggctacagagccagttccaggacagccagggctacacagtca 782

                                                                       
Query: 89  aatcctatattgttccttataaatttctctactgggggaaacagtcacatttttgttctc 148
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 781 aatcctatattgttccttataaatttctctactggggcaaacagtcacatttttgttctc 722

                                                                       
Query: 149 atttttaaacactccaaactattacaatcctgtctaagactataa------acacacaca 202
           |||||||||||||||||||||||||||||    |||||| |||||      |||||||||
Sbjct: 721 atttttaaacactccaaactattacaatc----ctaagaatataaacacacacacacaca 666

                                                                       
Query: 203 cacacacacacacacacacacacacacacacacacattttccccatttctaagacatgcc 262
           |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 665 cacacacacacacacacacacacacacacacacacactttcctcatttctaagacatgcc 606

                                                                       
Query: 263 atttgaaattcccaaagttcacaaccggttgatgtgacttatctcctgtcacagagttgt 322
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 605 atttgaaattcccaaagttcacaaccagttgatgtgacttatctcctgtcacagagttgt 546

                                                                       
Query: 323 agatgttctcttgagttagggtttaggactggcttggtcaattaaatgggttttccattt 382
           |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 545 agatgttctcttgagttagggtttaggactggcttggtcaattataggggttttccattt 486

                                                                       
Query: 383 tctccatgccatttct-gataattttccatttattgtatgacaaaaga--gggtcttctg 439
           | |||||||||||| | |||| ||||||||||||||||||||||||||  ||||||||||
Sbjct: 485 tttccatgccattt-tcgatatttttccatttattgtatgacaaaagatagggtcttctg 427

                                                                       
Query: 440 tagctccagctctcttggaattggctatgtaaccaaggaacacattgaacttcaggccct 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tagctccagctctcttggaattggctatgtaaccaaggaacacattgaacttcaggccct 367

                        
Query: 500 atttctttatcct 512
           |||||||||||||
Sbjct: 366 atttctttatcct 354


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 75
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)