BAC Information

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BAC

Clone NameMSMg01-347A14
Chromosome1 (Build37)
Map Location 6,184,680 - 6,185,066
singlet/doubletsinglet
Overlap genenone
Upstream geneEG636659, Oprk1, Npbwr1
Downstream gene4732440D04Rik, Rb1cc1, EG620393, LOC100039302, LOC664946, St18, LOC665015, LOC665027, LOC100039347, LOC435608, Pcmtd1, LOC545302
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347A14.T7 (MSMg01no347_a14.b1)MSMg01-347A14.TJ (MSMg01no347_a14.g1)
ACCAG459477AG459478
length771774
length of high quality
(start - end)		456 (48 - 503)540 (75 - 614)
definitionCHROMAT_FILE: MSMg01no347_a14.b1 PHD_FILE: MSMg01no347_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:53 2005CHROMAT_FILE: MSMg01no347_a14.g1 PHD_FILE: MSMg01no347_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATCATTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGTGAATCAACCACCTGTGGGATTAAAGGTGTGAACCTTGCCT
CATTTTACTCTTTTGCTAAATTTATCTGAAGTCTTACATAGTTGATCCAC
ACATACAAGAACTCAGTTTAGCCGGGCGTGGTGGCGCACACCTTTAATCC
CAGCACTTGTGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCT
GGTCTACAGAGTGAGTTCCAGGACAGCCAGGACTACACAGAGAAACCCTG
TCTCCCAAAAACCAAAAAAAAAAAAAAAGAACTCAGCTTTCCCTGTGTCC
CTGTGTGGTGTTATATAAACTCATAAGGCTGTGAATTGAGTTGAGCACTG
TAAACCCTAGAGTTTAATAACATATTCAAAATAATTATAGTAAACCATGA
CCCAGCCACAAACAAAGGAAGTTCAGTCTGATCAGTCTTTGTGCACATGC
CCCTCATAACTACAGCATTTTTCTAGACATCTTCCTGTCACCTTAGCCTA
GCTTCATAGATCTATTCCCACCATAGAAAACTACCGATCTGTTATCTTCT
CCCTATGTCTTTCACCACGTCCAACTTTTATGACAGACCTTTCAGCTGCT
TATTATTCTTCCCTCCCTTCCCTTATATTTCCGCCGCTCCCCCTTTATTT
TCCCCTTTGTCCTTTGCACCATGCTTATCCCCCTTTTCCTCCCCTTTCTT
CCCTTTCATTTTACTCCCCCN

CAATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAAAACCGAATGGCAGA
GAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAT
CCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGT
GGATATTATTTCCAAACCTAGGATACCCAAGATATAAGATACAATTTCCT
AAACACTTGAAACTCAGGAAAAATGGAGACTGAAGTGTGGACACTATACT
CCCCCCCTAAAAAAGGGGAACAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_a14.b1 MSMg01no347_a14.b1 CHROMAT_FILE:
MSMg01no347_a14.b1 PHD_FILE: MSMg01no347_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:53 2005
         (456 letters)



>mm_chr1_6184211_6185066
          Length = 856

 Score =  702 bits (363), Expect = 0.0
 Identities = 379/387 (97%), Gaps = 5/387 (1%)
 Strand = Plus / Minus

                                                                       
Query: 75  ttatctgaagtcttacatagttgatccacacatacaagaactcagtttagccgggcgtgg 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 856 ttatctgaagtcttacatagttgatccacacatacaagaactcagtttagctgggcgtgg 797

                                                                       
Query: 135 tggcgcacacctttaatcccagcacttgtgaggcagaggcaggcggatttctgagttcga 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 tggcgcacacctttaatcccagcacttgtgaggcagaggcaggcggatttctgagttcga 737

                                                                       
Query: 195 ggccagcctggtctacagagtgagttccaggacagccaggactacacagagaaaccctgt 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ggccagcctggtctacagagtgagttccaggacagccaggactacacagagaaaccctgt 677

                                                                       
Query: 255 ctcccaaaaaccaaaaaaaaaaaaaaa-----gaactcagctttccctgtgtccctgtgt 309
           ||||||||| |||||||||||||||||     ||||||||||||||||||||||||||||
Sbjct: 676 ctcccaaaacccaaaaaaaaaaaaaaaaaaaagaactcagctttccctgtgtccctgtgt 617

                                                                       
Query: 310 ggtgttatataaactcataaggctgtgaattgagttgagcactgtaaaccctagagttta 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ggtgttatataaactcataaggctgtgaattgagttgagcactgtaaaccctagagttta 557

                                                                       
Query: 370 ataacatattcaaaataattatagtaaaccatgacccagccacaaacaaaggaagttcag 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 556 ataacatattcaaaataattatagtaaaccatgacccagccacaaacaaagcaagttcag 497

                                      
Query: 430 tctgatcagtctttgtgcacatgcccc 456
           |||||||||||||||||||||||||||
Sbjct: 496 tctgatcagtctttgtgcacatgcccc 470


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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