Query= MSMg01no347_b02.b1 MSMg01no347_b02.b1 CHROMAT_FILE:
MSMg01no347_b02.b1 PHD_FILE: MSMg01no347_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:55 2005
(353 letters)
>mm_chr1_160311361_160312113
Length = 753
Score = 571 bits (295), Expect = e-167
Identities = 327/349 (93%), Gaps = 18/349 (5%)
Strand = Plus / Minus
Query: 5 gaattctactctctctctctctctctctctctctctctctctctctcacacacacacaca 64
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaattctactctctctctctctctctctctctctctctctctctct-------------- 590
Query: 65 cacacacacacacacacacacacacacacacacacacacaaatgaaatgatcagcttgag 124
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ----ctctcacacacacacacacacacacacacacacacaaatgaaatgatcagcttgag 534
Query: 125 ttggctatttagttgcagtgagggtccttattatgtggtctggattggcttcaaagagac 184
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 atggctattcagttgcagtgagggtccttattatgtggtctggattggcttcaaagagac 474
Query: 185 catcgttttgcctcagccgcaacctgtgctagaattctaagagtctcccagtaactggac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 catcgttttgcctcagccgcaacctgtgctagaattctaagagtctcccagtaactggac 414
Query: 245 ctcttgcttttctagcacatgctttctaatatgtgtttaaatgttatatgtttcaaacag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ctcttgcttttctagcacatgctttctaatatgtgtttaaatgttatatgtttcaaacag 354
Query: 305 atactccaagtgccatttaaagtattctcatacccatgttaacttagtt 353
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 atactccaagtgccatttaaagtattctcatacccatgttaacttagtt 305
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 753
Length adjustment: 9
Effective length of query: 344
Effective length of database: 744
Effective search space: 255936
Effective search space used: 255936
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no347_b02.g1 MSMg01no347_b02.g1 CHROMAT_FILE:
MSMg01no347_b02.g1 PHD_FILE: MSMg01no347_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:55 2005
(552 letters)
>mm_chr1_160126604_160127556
Length = 953
Score = 965 bits (499), Expect = 0.0
Identities = 538/551 (97%), Gaps = 3/551 (0%)
Strand = Plus / Plus
Query: 4 agttttatttgctgaggggctgtgagcgctcacaaagataa-ttgctagaggccctggga 62
|||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 204 agttttgtttgctgaggggctgtgagtgctcacaaagataatttgctagaggccctggga 263
Query: 63 actccatggctcttaccacccacctaggagtagacattgctacctcacttctgggtgttt 122
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 264 actccatggctcttaccacccacctaggagtagacattgttacctcacttctgggtgttt 323
Query: 123 ctttataacgagcactctgttgagaattttggcaaagtaaaagcttgtttttcatgctgg 182
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 324 ttttataacgagctctctgttgagaattttgacaaagtaaaagcttgtttttcatgctgg 383
Query: 183 gtaagtttttactaacttaccttatgccccgtacaatggaga-tttttttagcctccacc 241
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 384 gtaagtttttactaacttaccttatgccccgtacaatggagattttttttagcctccacc 443
Query: 242 ataaagaagtcgtttctactgtaagagatggaaaggtgagtgaggaagatgaacgactgt 301
| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 444 a-aaagaagtcgtttctactgtaagagatcgaaaggtgagtgaggaggatgaacgactgt 502
Query: 302 ggatgagaagaaccaggttcacagaaagtggcagtcattccccagacccagccttatgga 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ggatgagaagaaccaggttcacagaaagtggcagtcattccccagacccagccttatgga 562
Query: 362 cagtaggtaaaagcatcctatttcacaggtggatataaaaagttagacaatttcaataat 421
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 563 cagtaggtaaaagcatcctatttcacgggtggatataaaatgttagacaatttcaataat 622
Query: 422 ttgcccaagattacagaggtcgagagtaccacagctctgtgtataaggcaggctcctaat 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ttgcccaagattacagaggtcgagagtaccacagctctgtgtataaggcaggctcctaat 682
Query: 482 taatatctgaggatttgaaatgtcatgtgcaaaattagctgggaaaagacagggtctctc 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 taatatctgaggatttgaaatgtcatgtgcaaaattagctgggaaaagacagggtctctc 742
Query: 542 ctgactaattt 552
|||||||||||
Sbjct: 743 ctgactaattt 753
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 953
Length adjustment: 10
Effective length of query: 542
Effective length of database: 943
Effective search space: 511106
Effective search space used: 511106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
