Query= MSMg01no347_h09.b1 MSMg01no347_h09.b1 CHROMAT_FILE:
MSMg01no347_h09.b1 PHD_FILE: MSMg01no347_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:26 2005
(523 letters)
>mm_chr1_128168810_128169733
Length = 924
Score = 944 bits (488), Expect = 0.0
Identities = 512/520 (98%), Gaps = 1/520 (0%)
Strand = Plus / Minus
Query: 5 gaattcgtggcttgcaatcccgacactctggagatagagacaagggatacctggggcaag 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 gaattcgtggcttggaatcccgacactctggagatagagacaagggatacctggggcaag 665
Query: 65 ctggctagctgcacttgccaattggtgaactccgggtttagcataaactgctgccttgat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ctggctagctgcacttgccaattggtgaactccgggtttagcataaactgctgccttgat 605
Query: 125 agagaacaacttagaccaccaacattaactttagcccttcacatacacatgtgcacatgc 184
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 604 agagaacaacttagaccaccaacattaactttggcccttcacatacacatgtgcacatgc 545
Query: 185 actcacacaaatgtgcacgcacatgcacatatataacacatgcaaagtagaatagacagt 244
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 544 actcacacaaatgtgcacgcacatgcacatatataacacatgcaaagtaaaatagacagt 485
Query: 245 aggtctcaatatggctcctagctatatcatcagtaagtatattattaatgaccacagcta 304
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 aggtatcaatatggctcctagctatatcatcagtaagtatattattaatgaccacagcta 425
Query: 305 tttacaaaatgttatcacttgcaaaattttcaagagcttcc-tttttctttcttctacct 363
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 424 tttacaaaatattatcacttgcaaaattttcaagagcttccttttttctttcttctacct 365
Query: 364 ttgaggatcatatgtctttcaattcttttatagctgagaactgtacatctttctctcctg 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 364 ttgaggatcatatgtctttcaattcttttatagctgagaactgtacatctttctttcctg 305
Query: 424 ctattaaatatcaaagaaaaaatttgcctcgtagtgagttttagtgtacaaatgttctgc 483
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 304 ctattaaatatcaaagaaaaaatttgcctcatagtgagttttagtgtacaaatgttctgc 245
Query: 484 cctttccccccatacccttgctgcttccatttttgttcca 523
||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 cctttccccccatacccttgctgcttccatttttgttcca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 924
Length adjustment: 10
Effective length of query: 513
Effective length of database: 914
Effective search space: 468882
Effective search space used: 468882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no347_h09.g1 MSMg01no347_h09.g1 CHROMAT_FILE:
MSMg01no347_h09.g1 PHD_FILE: MSMg01no347_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:27 2005
(319 letters)
>mm_chr1_127983717_127984435
Length = 719
Score = 603 bits (312), Expect = e-177
Identities = 318/320 (99%), Gaps = 2/320 (0%)
Strand = Plus / Plus
Query: 1 cctgtctctcctgggatcacagagacacataaacgcacagacctggcttttgaaatgtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgtctctcctgggatcacagagacacataaacgcacagacctggcttttgaaatgtgt 260
Query: 61 gctctggggatagagctgaggtcctcattagtgcaaggcaggtacttcgctgacggcacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctctggggatagagctgaggtcctcattagtgcaaggcaggtacttcgctgacggcacc 320
Query: 121 atctccaccatacttaactattttaatttttcatttgcagacattaggccaagagtgatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atctccaccatacttaactattttaatttttcatttgcagacattaggccaagagtgatg 380
Query: 181 cttagtgagtgacctatgtaaggaatggatcggtgctttaaagacagcacagtcagctga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttagtgagtgacctatgtaaggaatggatcggtgctttaaagacagcacagtcagctga 440
Query: 241 aatgtaaccataggaaaacaactagtaatgagagacatgtctcctgtaccacatagggga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatgtaaccataggaaaacaactagtaatgagagacatgtctcctgtaccacatagggga 500
Query: 301 tttca-tacctcatctaccc 319
|| || ||||||||||||||
Sbjct: 501 tt-caatacctcatctaccc 519
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space: 220100
Effective search space used: 220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
