BAC Information

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BAC

Clone NameMSMg01-347H17
Chromosome1 (Build37)
Map Location 194,221,718 - 194,221,957
singlet/doubletsinglet
Overlap geneKcnh1
Upstream geneLOC100039501, LOC667044, Dtl, Ints7, Lpgat1, Nek2, 4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5, Traf5, LOC100042625, Rcor3
Downstream geneHhat, A730013G03Rik, Sertad4, LOC100039677, Syt14, AA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2, Lamb3, Camk1g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347H17.T7 (MSMg01no347_h17.b1)MSMg01-347H17.TJ (MSMg01no347_h17.g1)
ACCAG459812AG459813
length796814
length of high quality
(start - end)
370 (47 - 416)252 (77 - 328)
definitionCHROMAT_FILE: MSMg01no347_h17.b1 PHD_FILE: MSMg01no347_h17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:28 2005CHROMAT_FILE: MSMg01no347_h17.g1 PHD_FILE: MSMg01no347_h17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGCACTATTCCTCATCTGGTCCTGGGCTCTTTTGGTTGGGAGAC
TTTTAATGACTGCTTCTATTTCCTTAGAGGTTATGGGACTGTTTAGATGA
CTTATCTGATCCAGACTAAACTTTGGTACCTGGTATCTGTCTAGAAAATC
ATCCATTTCATCTAGATGTTCCAGTTTTGTTGAGTATTGCCTTTTAAAGT
AGGATGTGGTGATTTTTTAGATTTCTTCAGTTTCTGTTGTTATGTTTTCC
TTTCCATTTCTGATTTTGTTAATTTGTTTACTGTCTCTGTGCCCTCCGGC
TAGTCTGGCTAAGGGTTTGTCGATCTGATTTTCTCAGAGAAACAGCTCCT
GGTTTTGTTGATTCTTTGTATAGCTAGTTCTTTTTGCTTCTACTTGGCTG
ATTTTCAGCTCTGACGTTGATAATTTCCCTCTATCTATTCCTCTTGTGCA
TACTTGCTATTTTTTGTTTTGTTTTGCTCCGTTACTGCGTGTCGTTAAAC
TTTTTATTGAAGGTTTTCCCTTTCTTCCTTTCGCCTATATTCCCATCCTT
AACTTTCCCCTTTTCGATTTTCCTTCCCACGCTTCCATCCATTACCTTCT
TTATCTTTCATCCTTCTTCCTTTATCCCCCCCCNCCTCTTTTTTCCGTCT
CTCGCGTGCCCACTNGCCGGGTTTTTCATTATATCCACCTTTAATTCTCC
CTATCTCACTTTCTTCTCCCCCCCTTATCCCCCTTTGATTCTCCCG
NTTTCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGAGGAATCCTGCTCATGGTCAA
GGGGAGGTTTTCATGGGTGTTGATATTTGGATGAAGCAGAGAATTAAGCA
AGCTGTGGACAGAGATATACTCAGAGGGTGAGAGTGTCTCATGCCAATAG
GCCACACTCTAGAGTCTGGGCTCTTTAAGGGAAAGTTCCATAAGAAGAAA
CTGTTGGATGGTTAATTTTTTAAAATCTCTGTCTCTGTCTCTCTCTCTGT
CTCTCTCTGTGTCTCTGTCTCTCTCTCTCTGNGNATGNGTGTGNGNGTAC
CCATATATGTATATATATGTACATGATGCACCACAGCTTATATGTTGAAG
TCAAAGGAACCACCTTAAGGAAAGGAACCTGCCCTTCATTTTGGGTTTTA
AAAAGGGCTTCTTGGTTTCCCCCTATGGAAAAAATGGAGGCCCGGGCCTT
TGAATTTTCTGGGGGTCCCTCCGGGTCTTTGCCCTGGGCCTTTTCGAGAA
GTTTTGTGGCTTTGCTCCTCTGCCTCCCCCCCTCCTATGTTTTTTTGGGG
GCCCCGGGGGNCTTTTTCCCTTTATTTTTTCTGGGGGGGGGCGGCGCCTT
TTTTTTTTCCGGGAGGCTTTTCTTTTTTCAATTTCTATTTTTTTCTTTTT
TTTTCTTCGTACGCCAACCCCTTTTTTTTGGCCTTGTTTGTCCCCAATTT
TTTTGTCTTCTTGTTTTTCTCCTTTTTCCTTTTTATCCCTCACCTCCGCT
CTGTCTTCTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_h17.g1 MSMg01no347_h17.g1 CHROMAT_FILE:
MSMg01no347_h17.g1 PHD_FILE: MSMg01no347_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:28 2005
         (252 letters)



>mm_chr1_194221518_194222169
          Length = 652

 Score =  410 bits (212), Expect = e-119
 Identities = 235/248 (94%), Gaps = 10/248 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgaggaatcctgctcatggtcaaggggaggttttcatgggtgttgatatttggatgaag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 201 ttgaggaatcctgctcatggtcaaggggaggttttcatgggtgttgatatttggatgggg 260

                                                                       
Query: 61  cagagaattaagcaagctgtggacagagatatactcagagggtgagagtgtctcatgcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagagaattaagcaagctgtggacagagatatactcagagggtgagagtgtctcatgcca 320

                                                                       
Query: 121 ataggccacactctagagtctgggctctttaagggaaagttccataagaagaaactgttg 180
            |        ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ct--------ctctagagtctgggctctttaagggaaagttccataagaagaaactgttg 372

                                                                       
Query: 181 gatggttaattttttaaaatctctgtctctgtctctctctct--gtctctctctgtgtct 238
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 373 gatggttaattttttaaaatctctgtctctgtctctctctctctgtctctctctgtgtct 432

                   
Query: 239 ctgtctct 246
           ||||||||
Sbjct: 433 ctgtctct 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)