BAC Information

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BAC

Clone NameMSMg01-347O09
Chromosome1 (Build37)
Map Location 15,524,354 - 15,524,633
singlet/doubletsinglet
Overlap geneKcnb2
Upstream geneLOC665391, Msc, Smt3h2-ps4, EG665407, Trpa1, EG269105, LOC100039949, LOC100039959
Downstream genePpia-ps1_109.1, Terf1, Gm106, LOC665434, 4930444P10Rik, Rpl7, Rdh10, EG665282, Stau2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347O09.T7 (MSMg01no347_o09.b1)MSMg01-347O09.TJ (MSMg01no347_o09.g1)
ACCAG460128AG460129
length740838
length of high quality
(start - end)
280 (73 - 352)---
definitionCHROMAT_FILE: MSMg01no347_o09.b1 PHD_FILE: MSMg01no347_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:01 2005CHROMAT_FILE: MSMg01no347_o09.g1 PHD_FILE: MSMg01no347_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAAACTAGTCCTCATGTCAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACTATTTTACAGGGGGGAAAGAAATGCAAGGAATGGTGTCA
GTCAGCTCCCTGCAGTAGTGCTGGATTCCAGCTCTCTGTGGAGAAGGCCT
GAGGGATGACCCTCTGTTCAAGTACCACAGCACTTAGAGATTCTCTGGGC
AGCAAAGCACAACCACTTGACAGCAGAGCTTTTCCTGTGTTGCTTTAGAG
GAGGGAGCTTAGTAGTTGAAAGATGGGCTCTTACTGGCCGTGCACTTCTG
TCTTTTTCAGAGCTTCTCTAGATCTCATAAGTGAGGGAAAGATCTTTTGG
AGTAGGCACTATCTGCTCCATGCCTACAGAAAGCTGGGGACCTTCCCAAC
ACCTTATGGTTTTCTCAGCTTTGCTATTCCCAAGAAAGGTGTCTTTCCCT
TTAACCCCAGCTTCTATTCAGCACAGAAAATGGTTGGCAAACACTCTATG
CCAGTAGTCTCTCCTGCTCTTTGCATTTTCTATTAGCATGATTTCACTGC
TTATTCAGCTACTTCTTGTTTCTGCTATATGCTTGACAATTTCCCCTCAT
TGATAGAACATGATTGACCTATTCTTCTTTATCCCCCTTGAACCCTTTGC
CCTCTTTCACCTACTTTCTCTTGGCCTCTCATGAACTCCTTCCTTTATTT
TTCGTCCCCCTTGCTCTTATCCTCCATTTTTTTTATTACG
AATACTTTNNNAANCCTGNCNNCCCCCTGTTTTCCCACTTTANNTGACCT
ATANAATTTTCCCCGNAATTCTTTACTAAACCCATCTGGTCCTGCAATTT
TTTTGNCTANNANACTACTANTGACTGCTTCTATTTCTTTNACNNTTATG
NNACTGTTTANATGNTTTATCTGATCCTGTTTTAACTTTGCCCCCCNCCT
TTTTTTTAAAATTCCCCTTTCGCGGGGGTGTGGGGGGCGGGGGGGGGGGG
GGGGGGGGGGAGGAGAAAGGAGAGGGGGGGGGAGGAGGGGGGGGGGGGGG
GAGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGAAGAGGGGGGGGNNTCCT
NNNNNNNNNNNNNNNTNNNGNNGTGGGGGGGGGAAAATTCTTNTNNTNTN
TNNTATTATGGGGAAAGAAAAACAGGGAGGAGANTCCNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTNNTNNNNNNNNNTNNNN
NTNNTNNNTTNNTNNTTTTNNNNNNNNNNNTNNNTTTTTNTTTTTTNNNT
TTTTTNNNNNNNNTTNNTTNNNNNNNTTNTTNTTTTTTNTTTTTTNTNNN
TNNNNNTTTNNNNNNTTTTTTTNNTTNTNNNNNNNNNNNTNNNNTNNNTT
TTNTTTTNCCCTTNTTTTNNTNNTNNTTAATAAGAGGAGGGATCTTTNNT
NTTNNTCTTTTNNTNNNNNNNNNNNNTNNTTNNTTTNTTTNTNNNNTNNN
NTTTTTTNTTTTTTTTTTTTTNTTTNNNNNNNCNNNTNTTTTTTTTCTTT
CTCGTTGTTTTGTGTGGTGTTGGGGNNNTTAGCNNCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_o09.b1 MSMg01no347_o09.b1 CHROMAT_FILE:
MSMg01no347_o09.b1 PHD_FILE: MSMg01no347_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:01 2005
         (280 letters)



>mm_chr1_15524154_15524833
          Length = 680

 Score =  441 bits (228), Expect = e-128
 Identities = 267/280 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggggaaagaaatgcaaggaatggtgtcagtcagctccctgcagtagtgctggattccagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ggggaaagaaatgcaaggaatggtgtcagtcagctccctgcagtagtgctggattccagc 421

                                                                       
Query: 61  tctctgtggagaaggcctgagggatgaccctctgttcaagtaccacagcacttagagatt 120
           |||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 420 tctctgtggagaaggcatgagggatgaccctctgttcaattaccacagcacttagacatt 361

                                                                       
Query: 121 ctctgggcagcaaagcacaaccacttgacagcagagcttttcctgtgttgctttagagga 180
           |||||| ||||||||| || |||||||| ||||||||||||||||||||||| |||||||
Sbjct: 360 ctctggacagcaaagcgcagccacttgatagcagagcttttcctgtgttgctctagagga 301

                                                                       
Query: 181 gggagcttagtagttgaaagatgggctcttactggccgtgcacttctgtctttttcagag 240
           |||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 300 gggagcttagtagtcgaaagatgggctcttactggacgtgcacttctgcctttttcagag 241

                                                   
Query: 241 cttctctagatctcataagtgagggaaagatcttttggag 280
           |||||||||||||| ||||||||||||||| |||||||||
Sbjct: 240 cttctctagatctcctaagtgagggaaagagcttttggag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)