Query= MSMg01no348_c10.b1 MSMg01no348_c10.b1 CHROMAT_FILE:
MSMg01no348_c10.b1 PHD_FILE: MSMg01no348_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:21 2005
(553 letters)
>mm_chr1_6701735_6702687
Length = 953
Score = 1013 bits (524), Expect = 0.0
Identities = 542/550 (98%), Gaps = 6/550 (1%)
Strand = Plus / Plus
Query: 5 gaattcttcaaatctcagctctggtaggtctgtggagattagccccaaggtgccgtgaga 64
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 209 gaattcttcaaatctcagctctggtaggtatgtggagattagccccaaggtgccgtgaga 268
Query: 65 ccaaacaaacaaacaaacaaacaaggcaaacatatctagacagattgtaatttattgaat 124
| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 269 c----caaacaaacaaacaaacaaggcaaacagatctagacagattgtaatttattgaat 324
Query: 125 gatatttttcatgaaagcctaagccaagatggaaacacagtcctggaaaaagtaatggaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gatatttttcatgaaagcctaagccaagatggaaacacagtcctggaaaaagtaatggaa 384
Query: 185 tttggatctccaagaatagtacatttagggaagtcagaagtcgctttatcttgcctggaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttggatctccaagaatagtacatttagggaagtcagaagtcgctttatcttgcctggaa 444
Query: 245 tac-atccagatcatcctaggccagcatcaaagagtcagacacactcctgaaactagggt 303
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 t-ctatccagatcatcctaggccagcatcaaagagtcagacacactcctgaaactagggt 503
Query: 304 ctggcgcaaaactccacacaccagtctaaagtcttgtctgtgtatagtttgctgggatgc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctggcgcaaaactccacacaccagtctaaagtcttgtctgtgtatagtttgctgggatgc 563
Query: 364 tatttaggaagaccaggtggggttaccctggagcaactgtggtagtcatacatcaagacc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tatttaggaagaccaggtggggttaccctggagcaactgtggtagtcatacatcaagacc 623
Query: 424 gctacagttttgttgagctgtatctaattatggtgcagtaaatgtcagagtgtttgtaga 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gctacagttttgttgagctgtatctaattatggtgcagtaaatgtcagagtgtttgtaga 683
Query: 484 gattgcaatttcagttcttttgtataagtaatcagaagtgacagtattagattatatagc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gattgcaatttcagttcttttgtataagtaatcagaagtgacagtattagattatatagc 743
Query: 544 aatagtctac 553
||||||||||
Sbjct: 744 aatagtctac 753
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space: 512049
Effective search space used: 512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no348_c10.g1 MSMg01no348_c10.g1 CHROMAT_FILE:
MSMg01no348_c10.g1 PHD_FILE: MSMg01no348_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:21 2005
(576 letters)
>mm_chr1_6851028_6852003
Length = 976
Score = 1075 bits (556), Expect = 0.0
Identities = 571/576 (99%)
Strand = Plus / Minus
Query: 1 aagacctcaggaagtttgttctgattagaaatatgtgatgggaaagggcagatcttgcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 aagacctcaggaagtttgttctgattagaaatatgtgatgggaaagggcagatcttgcta 717
Query: 61 agttccagtagaattgatacaattctatgacaaatttgtatcatgaactgtagatactac 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 716 agtcccagtagaattgatacaattctatgacaaatttgtatcatgaactgtagatacaac 657
Query: 121 tttctcatagacagcaaaaaccaaggtaggatgtaaaacatactaaattaagtagacact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 tttctcatagacagcaaaaaccaaggtaggatgtaaaacatactaaattaagtagacact 597
Query: 181 aagatactggctgagcagctcgcatcgctttcccagaacacatatgagcatttcgtgtaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 aagatactggctgagcagctcgcatcgctttcccagaacacatatgagcatttcgtgtaa 537
Query: 241 gcttagtgactgaaagtatgtggtgctccctgaaagcaaacctaatttaagcccagctcc 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gcttagtgactgaaagtacgtggtgctccctgaaagcaaacctaatttaagcccagctcc 477
Query: 301 cgctttgatccagacttctctttagttaatttgagtaaattttacattgcctatgaggaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 cgctttgatccagacttctctttagttaatttgagtaaattttacattgcctatgaggaa 417
Query: 361 caatcatatttaagagatgtgtaagtctggctagaaactcaaaagtagagaatactgatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 caatcatatttaagagatgtgtaagtctggctagaaactcaaaagtagagaatactgatg 357
Query: 421 acttaggaaaacaaaagcaggtagcctagaattatcacattttttgaacctaccttgcat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 acttaggaaaacaaaagcaggtagcctagaattatcacattttttgaacctaccttgcat 297
Query: 481 aaatgtgagctatgttcaggacctccagcagtttggtatcaggaaaggactccttgtgtg 540
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 aaatgtaagctatattcaggacctccagcagtttggtatcaggaaaggactccttgtgtg 237
Query: 541 ctattcattagatctgggcaaaattctttctagttc 576
||||||||||||||||||||||||||||||||||||
Sbjct: 236 ctattcattagatctgggcaaaattctttctagttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
