Query= MSMg01no348_d24.b1 MSMg01no348_d24.b1 CHROMAT_FILE:
MSMg01no348_d24.b1 PHD_FILE: MSMg01no348_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:29 2005
(581 letters)
>mm_chr1_133590766_133591746
Length = 981
Score = 977 bits (505), Expect = 0.0
Identities = 558/578 (96%), Gaps = 6/578 (1%)
Strand = Plus / Minus
Query: 5 gaattcagggctttgtgaatgctgagcaagcaccatatgcagagatcccatgaaatgcaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 gaattcagggctttgtgaatgctgagcaagcaccatatgcagagatcccatgaaatgcaa 727
Query: 65 aaggtatacattgtaaaataattaaatccaattaattaatattagtaattaataataatt 124
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 726 aaggtatacattgtaaaataattaaattcaattaattaatattagtaattaataataatt 667
Query: 125 aatcgataactaattaattactgagcataaacaaatgtacacctttcctgtgaagggaat 184
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 666 aatcaataactaattaattactgagcataaacaaatgtacacctttcctgtgaagcgaat 607
Query: 185 gcatgaaagcctggacttgacactgggatcacctaagatgaaacacaaaggacttcctct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gcatgaaagcctggacttgacactgggatcacctaagatgaaacacaaaggacttcctct 547
Query: 245 aggagacaccagggaagacagggaccaagtaaccctagaaagtgatgctggcaacatggc 304
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 546 aggagacaccagggaagacagggaccaagtaactctagaaagtgatgctggcaacatggc 487
Query: 305 gggcctgaagacgtgaggcatgtggtgtggtgaaatttcctaggagagaatgaaataaaa 364
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gggcctgaagatgcgaggcatgtggtgtggtgaaatttcctaggagagaatgaaataaaa 427
Query: 365 ttctggggatggagaatggaaaaggtgattgatttgcttctggggaggaagcaagattga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ttctggggatggagaatggaaaaggtgattgatttgcttctggggaggaagcaagattga 367
Query: 425 tgtggattatgactctcacatcccatccatccatccatccatccatccatccattcatcc 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 366 tgtggattatgactctcacatcccatccatccatccatccatccatccatccat----cc 311
Query: 485 atccatccatccactcatccatccatccatccatccatccatccacccacccatccatcc 544
| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 310 acccatccatccactcatccatccatccatccatccatccatccatccatccatccatct 251
Query: 545 atccatgcatccatccatccatccanntcatc-atcca 581
||||| |||||| ||||||||||| ||||| |||||
Sbjct: 250 gtccatccatccacccatccatccac-tcatccatcca 214
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 165
Number of extensions: 31
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space: 554441
Effective search space used: 554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no348_d24.g1 MSMg01no348_d24.g1 CHROMAT_FILE:
MSMg01no348_d24.g1 PHD_FILE: MSMg01no348_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:29 2005
(157 letters)
>mm_chr1_133565442_133565997
Length = 556
Score = 296 bits (153), Expect = 4e-85
Identities = 156/157 (99%), Gaps = 1/157 (0%)
Strand = Plus / Plus
Query: 1 ggttaagcttgttctatcttatggctgtactgccacgagttttaaagatgcacacactac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggttaagcttgttctatcttatggctgtactgccacgagttttaaagatgcacacactac 260
Query: 61 agttaaaaagagcatggagctcaccgctctagcctggggtgctgaggaagtcactttcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttaaaaagagcatggagctcaccgctctagcctggggtgctgaggaagtcactttcct 320
Query: 121 acctacacagaaagatttacctnttcccactctggcc 157
|||||||||||||||||||||| ||||||||||||||
Sbjct: 321 acctacacagaaagatttacct-ttcccactctggcc 356
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 157
Length of database: 556
Length adjustment: 8
Effective length of query: 149
Effective length of database: 548
Effective search space: 81652
Effective search space used: 81652
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
