Query= MSMg01no348_f01.b1 MSMg01no348_f01.b1 CHROMAT_FILE:
MSMg01no348_f01.b1 PHD_FILE: MSMg01no348_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:34 2005
(589 letters)
>mm_chr1_105040033_105041021
Length = 989
Score = 565 bits (292), Expect = e-165
Identities = 325/336 (96%)
Strand = Plus / Minus
Query: 254 actgatactgcttagcacgatcctgagaatgattcagtaagcagcagacttccattcttt 313
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 989 actgatactgcttagcacaatcctgagaatgattcagtaagcagcagacttctattcttt 930
Query: 314 caccttcaatgtcctgcatgagttgcttggatttccctcaatgatgggatgtgacttata 373
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 929 caccttcaatgccctgcatgagttgcttggatttccctcaatgaagggatgtgacttata 870
Query: 374 ggatgaaataaactacattctcccccaaaattgcctttggtcaaagtgttggatcacagc 433
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 869 ggatgaaataaactacattctcctccaaaattgcctttggtcaaagtgttggatcacagc 810
Query: 434 aacagatttgaaactagacattatgaaagtccagtaactgcatttctcaacttcctataa 493
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 809 aacagatttaaaactagacattatgaaagtccagtaactgcatttctcaactccctataa 750
Query: 494 cctgggctatctccacatagatctgtttattgaaacttgaactctatgcttagtaagacc 553
||||||||||||||||||||||||| |||||||||||||||||||||||| | | |||||
Sbjct: 749 cctgggctatctccacatagatctggttattgaaacttgaactctatgctcaatcagacc 690
Query: 554 ccttgctgtaataagtaaagcacttggctctgtgtt 589
||||||||||||||||||||||||||||||||||||
Sbjct: 689 ccttgctgtaataagtaaagcacttggctctgtgtt 654
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no348_f01.g1 MSMg01no348_f01.g1 CHROMAT_FILE:
MSMg01no348_f01.g1 PHD_FILE: MSMg01no348_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:34 2005
(503 letters)
>mm_chr1_104868278_104869179
Length = 902
Score = 919 bits (475), Expect = 0.0
Identities = 496/503 (98%), Gaps = 1/503 (0%)
Strand = Plus / Plus
Query: 1 tttatgttttgttgttgtggctgctgctgcttctgctgttcctgctgctgctattatttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttatgttttgttgttgtggctgctgctgcttctgctgttcctgctgctgctattatttg 260
Query: 61 aggtactgactctggaacccagggcttcatgcatgttaagaacattctttcttattgggt 120
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 aggtactgactctggaacccagggcttcatgcatgttaagagcattctttcttattggg- 319
Query: 121 ggggggggacttgccatcctgtgaaattctttgtatatgtgaacctttgtgtacaaaaaa 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gggggggggcttgccatcctgtgaaattctttgtatatgtgaacctttgtgtacaaaaaa 379
Query: 181 agatatgtgaatgtatatatatgctttaatatatgcaattttatgatgtaggagtgtgag 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 380 agatatgtgaatgtatatatatgttttaatatatgcaattttatgatgtaggagtgtgag 439
Query: 241 aggacaaccttgaataatatttattaggtgccatatattttcatgagaaagggtgtctca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aggacaaccttgaataatatttattaggtgccatatattttcatgagaaagggtgtctca 499
Query: 301 ctagcctggatattgaaggttaggctgcctttattcctttctctgcctcctagatctgtc 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 500 ctagcctggatattgaaggttaggctgcctttattcctttctctgcctcttagatctgtc 559
Query: 361 atgctaagtatgcaccactatgtctgtttgatttattaacagagcttctgtgggatcaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atgctaagtatgcaccactatgtctgtttgatttattaacagagcttctgtgggatcaaa 619
Query: 421 tttaggtcctcatgattgtgttcaacctctccataaactgaaccatctcaaaacctgtga 480
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 620 tttaggtcctcatgattgtgttcaaccactccataaactgaaccatctcaaaacctgtga 679
Query: 481 atttcctttttggtgttgttgtt 503
|||||||||||| ||||||||||
Sbjct: 680 atttcctttttgttgttgttgtt 702
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 902
Length adjustment: 10
Effective length of query: 493
Effective length of database: 892
Effective search space: 439756
Effective search space used: 439756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
