BAC Information

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BAC

Clone NameMSMg01-348F12
Chromosome1 (Build37)
Map Location 53,073,215 - 53,073,457
singlet/doubletsinglet
Overlap genenone
Upstream geneStat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik
Downstream geneGdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b, Hecw2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348F12.T7 (MSMg01no348_f12.b1)MSMg01-348F12.TJ (MSMg01no348_f12.g1)
ACCAG460463AG460464
length751756
length of high quality
(start - end)
244 (65 - 308)242 (68 - 309)
definitionCHROMAT_FILE: MSMg01no348_f12.b1 PHD_FILE: MSMg01no348_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:36 2005CHROMAT_FILE: MSMg01no348_f12.g1 PHD_FILE: MSMg01no348_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGGCCGCAANANGACTCACTTTCAAAAGAGGATCCGCGGAATTCCAAG
TTTCAATTACACAGTCAGTACAACCTTTCTGCTCATAGATTTACCTAAAT
AGCTCACACCAGTTTTTCCTTTCAGGATTTGACCTCCACTTCCATGGGAG
AATTTTAAAGAACACTTCAGGTTTTAAGGCCCGAATCTGGAAGCAACAAG
AATATGAGCTGGTTGCTGGCTTTAAAAACTCTGCTTTAATTCATCTCTCT
TCTTAATTCTGACACTACAGGGACTTTTTCTTGATTTCATATCAGTCTAT
ATACTTATTTTTTTATTCATATGTTATTCTGTGTTTATAGCAAAATAGTT
TAGGGCTTGTTGATATAATTTCATAATTTATTATGGTGAATATGAACATC
TTATTTTTAAAAGAATACTAATGAAAAATCACTTATAGTATACTTATGAT
TTCTAAACACTAAGAGAGACCAAAAGAGGTCATAAAGGAGAGGAGAAGGT
GTATGACAAAGTTACATCAAGGAGTTGTGCTGTTTTAGGAATCTAGGTTT
GTCTTCAGAGAAATAGACAGCCTATTGAAGCATTTTACAGATAAATTCCA
GTTTAAAATTGCATACTGATTTGCATTTCCCTGATGACTAACGACTGTTA
ACATTTTCTTCAGTTGCTTCTCTGCCCTTCAAGATTCCCCCTTTGAAAAT
CCGGTTAACTTGTGAACCCATTTTTAAATGGGGTAATCAAGGTGGTGGGG
G
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCTGTTTAGCTCTGTACCCATTTTTAATAGGGT
TATTTGGTTCTCTGGAGTCTACCTTCTTGAATTCTTCGTATATTTTGGAT
ATTAACCCTCTATTGAATGTAGGGTTGGTAAACATCTTTTCCCAATCTGT
GGGTTGCCATTTTGTCCTACTGACAGTGTCCTTTGCCTTACAGAAGCTTT
GCAATTTTATGAGGTCCCATTTGTTCATTGTTGATCTTAGAGCATGAGCC
ATTGGTGTTCTTTTCAGGAAATTTTCCCGTGTGCCAATGTGTTCGAGGTT
CTTTCTCACTTTCTCTTCTTTTAGATTCAGTGAGCATATCTGGTTTTAAG
TTCTAGCCAGAGCAATTAGGCAACAAAAGGAGATCAAAGGTATACAAATT
GGATAGGAAGAAGTCAAAGTATCATTATTTGCATACAGTATGATAGTATA
CATAATCAACCCCAGAGAACTCCTACAGGTGATAAATAACTTTTGCAAAG
TAACTGGATATTAAATTTATCTCTACCAATCCTTAATTTCCCTCTACTCC
AAAGACAATCGGTCTGAGAAACAAATTTAGTGATACCACACCCCTCCCTC
CTTTTTCCAATAAATATATTTTCCCTCGGGGTGACTCTCCCCACTCTTGG
TCACGACCCCGACTGGTATTAACGAATATTTTCTTTTATACACCAACTTT
TTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_f12.b1 MSMg01no348_f12.b1 CHROMAT_FILE:
MSMg01no348_f12.b1 PHD_FILE: MSMg01no348_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:36 2005
         (244 letters)



>mm_chr1_53073015_53073658
          Length = 644

 Score =  455 bits (235), Expect = e-132
 Identities = 241/243 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagtacaacctttctgctcatagatttacctaaatagctcacaccagtttttcctttca 60
           ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 201 tcagtacaacctttctgctcatagatttacctacatagctcactccagtttttcctttca 260

                                                                       
Query: 61  ggatttgacctccacttccatgggagaattttaaagaacacttcaggttttaaggcccga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggatttgacctccacttccatgggagaattttaaagaacacttcaggttttaaggcccga 320

                                                                       
Query: 121 atctggaagcaacaagaatatgagctggttgctggctttaaaaactctgctttaattcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atctggaagcaacaagaatatgagctggttgctggctttaaaaactctgctttaattcat 380

                                                                       
Query: 181 ctctcttcttaattctgacactacagggactttttcttgatttcatatcagtctatatac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctcttcttaattctgacactacagggactttttcttgatttcatatcagtctatatac 440

              
Query: 241 tta 243
           |||
Sbjct: 441 tta 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)