Query= MSMg01no348_g19.b1 MSMg01no348_g19.b1 CHROMAT_FILE:
MSMg01no348_g19.b1 PHD_FILE: MSMg01no348_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:42 2005
(502 letters)
>mm_chr1_11620951_11621852
Length = 902
Score = 864 bits (447), Expect = 0.0
Identities = 486/499 (97%), Gaps = 2/499 (0%)
Strand = Plus / Plus
Query: 5 gaattctctggctgcttgacttctcacagcagtttccatttcttcctttgggattcattt 64
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctggctgcttgacttctctcagcagtttccatttcttcctttgggattcattt 264
Query: 65 tcctggcttttcttaccctggactctgtactaaccctcacttatcctcagaaaacactat 124
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcctggcttttcttactctggactctgtactaaccctcacttatcctcagaaaacactat 324
Query: 125 aattagtcctattattccaggaaggtgactatttttcatcagcaagtagaagatattagt 184
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 325 aattagtcctattattccaggaaggtgaccatttttcatcagcaagtagaagatattagt 384
Query: 185 tcaaagaatctgattgtggatcttcacttaatgtgattcttttccctgtaattaataact 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcaaagaatctgattgtggatcttcacttaatgtgattcttttccctgtaattaataact 444
Query: 245 gtgaatcttaaaaatcttgttaaacacttccaagtataatataatcattaaatagttcac 304
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtgaatcttaaaagtcttgttaaacacttccaagtataatataatcattaaatagttca- 503
Query: 305 aca-tagagaagactagaaaaatgatcaactaggtctaatgtagtcattggtagatttac 363
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 504 acaatagagaagactagaaaaatggtcaactaggtctaatgtagtcattggtagatttac 563
Query: 364 aaatgtcagcattttgtttcctgtaagtagtttttcaaaacttgcaatcagctctctcat 423
||||||||||||||||||| ||||||||| |||||||||||||| |||||| ||||||||
Sbjct: 564 aaatgtcagcattttgttttctgtaagtaatttttcaaaacttgtaatcaggtctctcat 623
Query: 424 tgccctatttccatgctcctgatgtaatcccttgaccaagccagctcagtcagtcaaccg 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 624 tgccctatttccatgctcctgatgtaatcccttgaccaagccagctcagtcagtcaactg 683
Query: 484 gatctcaagggacagagtg 502
| |||||||||||||||||
Sbjct: 684 gttctcaagggacagagtg 702
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space: 438864
Effective search space used: 438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no348_g19.g1 MSMg01no348_g19.g1 CHROMAT_FILE:
MSMg01no348_g19.g1 PHD_FILE: MSMg01no348_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:43 2005
(440 letters)
>mm_chr1_11824208_11825047
Length = 840
Score = 779 bits (403), Expect = 0.0
Identities = 430/439 (97%), Gaps = 1/439 (0%)
Strand = Plus / Minus
Query: 1 aatatataatagaggaatgattaaagttgttattcaagaaaatttctcattagaaaacac 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 444 aatatataatagaggaatgattaaaattgttattcaagaaaatttctcattagaaaacac 385
Query: 61 tgcttgatcattgtgggaagaaggcaaactctttaagtgccaatataaagtcacttacaa 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||
Sbjct: 384 tgcttgatcattgtgggaagaaggcaaactctttaaatgccaatataaagtcatttataa 325
Query: 121 atcatttgattaaacaatgctaatttttcactggcatatcagaagttttaaagtaagcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atcatttgattaaacaatgctaatttttcactggcatatcagaagttttaaagtaagcca 265
Query: 181 aacattgtaggcagagattaatttgataaggctattagaaaaataaatcttctagtaata 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 264 aacattgtaggcagagattaatttgataagactattagaaaaataaatcttctagtaata 205
Query: 241 tcacttttaattaaaaaatattttttgtctcaaacaaataggttaaacatccagcttaga 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tcacttttaatt-aaaaatattttttgtctcaaacaaataggttaaacatccagcttaga 146
Query: 301 ctggcttccacttggctatgtacttaatgaactctgggtcttcctgtctccaccactgaa 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 ctggcttccacctggctatgtacttaatgaactctgggtcttcctgtctccaccactgaa 86
Query: 361 gtggtagaatcataggcatgagtaatgaagcctattatacatttagacatgcaaggagaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 85 gtggtagaatcataggcatgagtaatgaagcctattatacatttagacatgtaaggagaa 26
Query: 421 ataaaaacctagctagatt 439
|||||||| ||||||||||
Sbjct: 25 ataaaaacttagctagatt 7
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space: 358161
Effective search space used: 358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
