Query= MSMg01no348_i22.b1 MSMg01no348_i22.b1 CHROMAT_FILE:
MSMg01no348_i22.b1 PHD_FILE: MSMg01no348_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:53 2005
(513 letters)
>mm_chr1_160926455_160927362
Length = 908
Score = 868 bits (449), Expect = 0.0
Identities = 493/513 (96%), Gaps = 11/513 (2%)
Strand = Plus / Plus
Query: 4 ggaattcagtttgtac---gtatggttagtttgtttggagttttgtatctgtgataacca 60
||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 204 ggaattcagtttg--caaagtatggttagtttgtttagagttttgtatctgtgataacca 261
Query: 61 gtgtaatagatctagttttctttctcctatttttgtcctgtttttgtatcaatgttataa 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gtgtaatagatctagttttctttctcctatttttgtcctgtttttgtatcaatgttatac 321
Query: 121 tgtctttagagaatgcattcactactgttcatgttcttaagaatatggaattatgtcacg 180
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
Sbjct: 322 tgtctttagagaatgcattcattattgttcatgttcttaagaatatggaattatgtcatg 381
Query: 181 tgcaggaaaacaaatgcaactaaggatcaccttgcaagcaaaccaaacaaactctcagac 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 382 tgcaggaaaacaaatgcaactaa------ccttgcaagcaaaccaaacaaactctcagaa 435
Query: 241 aaacactgtatgctttttctcatctgtaacatctagatttgtacacattgctataatttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aaacactgtatgctttttctcatctgtaacatctagatttgtacacattgctataatttg 495
Query: 301 ggcagtcccttcatgatcatcgggtgatacaggagaaatcaagttctcttcttagggttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 496 ggcagtcccttcatgatcatcgggtgatacaggagaaatcaagttctcttcttagggatc 555
Query: 361 ttcatctcattaatatttttatttataacttaaggatgggatcaaaaggaagtttaagga 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 556 ttcatctcattaatatttttatttataacttaaggatgggctcaaaaggaagtttaagga 615
Query: 421 caattttattagactttaaaaagaaaacagcccacaggaggtatgctgtaagaggcatgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 caattttattagactttaaaaagaaaacagcccacaggaggtatgctgtaagaggcatgg 675
Query: 481 tgctatctgaaggaggagagtgggtggcatgga 513
|||| ||||||||||||||||||||||||||||
Sbjct: 676 tgctgtctgaaggaggagagtgggtggcatgga 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 908
Length adjustment: 10
Effective length of query: 503
Effective length of database: 898
Effective search space: 451694
Effective search space used: 451694
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no348_i22.g1 MSMg01no348_i22.g1 CHROMAT_FILE:
MSMg01no348_i22.g1 PHD_FILE: MSMg01no348_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:53 2005
(497 letters)
>mm_chr1_161084123_161085019
Length = 897
Score = 669 bits (346), Expect = 0.0
Identities = 366/378 (96%), Gaps = 9/378 (2%)
Strand = Plus / Minus
Query: 129 ttaaaattatttaaaatatcccctttaaaaatcccctgttttctatggtgccaactgtat 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 ttaaaattatttaaaatatcccctttaaaaatcccctgttttctatggtgccaactgtat 838
Query: 189 tg---------tctctctgatttacggtgattaatgtgaattctttttcagacaatttaa 239
|| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 tgtctctctgatctctctgatttacggtgattaatgtgaattctttttcagacaatttaa 778
Query: 240 agacatctaggtttttttttgatatggttaatagaaatttgttggctcctttgattgtgt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 agacatctaggtttttttttgatatggttaatagaaatttgttggctcctttgattgtgt 718
Query: 300 tttctcttgctttttcaggtacccataaaactaatgtgttgcctgttatgtagttttata 359
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 717 tttctcttgctttttcaggtacccataaaacgaatgtgttgcctgttatgtagttttata 658
Query: 360 gactgactttgagagggaaaaaaacatccttatttagcagtgattaatatgaggaaatga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gactgactttgagagggaaaaaaacatccttatttagcagtgattaatatgaggaaatga 598
Query: 420 gagactaatccttatcagacaaaaacctgataaaaataaatgcttttggttgaaaaatac 479
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 597 gagactaatccttatcagacaaaaacctgataaaaataaatgagtttggttgaaaaatac 538
Query: 480 cagaacaagaagacagtg 497
||||||||||||||||||
Sbjct: 537 cagaacaagaagacagtg 520
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space: 431969
Effective search space used: 431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
