BAC Information

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BAC

Clone NameMSMg01-348K10
Chromosome1 (Build37)
Map Location 41,534,549 - 41,534,949
singlet/doubletsinglet
Overlap genenone
Upstream geneIl18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1, LOC100041441
Downstream geneLOC383634, LOC666582
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348K10.T7 (MSMg01no348_k10.b1)MSMg01-348K10.TJ (MSMg01no348_k10.g1)
ACCAG460696AG460697
length742819
length of high quality
(start - end)		524 (32 - 555)37 (69 - 105)
definitionCHROMAT_FILE: MSMg01no348_k10.b1 PHD_FILE: MSMg01no348_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:01 2005CHROMAT_FILE: MSMg01no348_k10.g1 PHD_FILE: MSMg01no348_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTCCCGAGAGGATCCGCGGAATTCCTA
CTTTCTCACTCCCTGAACAACACTTAAATGAAAAACTTCCACAATGAAGT
AGCAGAAAATGGTAGAGTTTTGAAAAGTTCTTCATGCTTATTTATTTAAT
TTTAAGTTAAATCTGCTCATATAGAAGTCAGGGAGACACCCTTTGTGAAC
CAAAGCGTTTCCTCCAGTGCTGCATGCATGCATGTATGTGCGTGCATGCG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTCTCA
TGTGTGTGTGTGTAAGGGGAGCTTAATGGTGTAGCCCTGCATTATCTTAA
ACTCGCTATGTAGACTAATCTGTTTTCAGACTTATGAATTTATCTTGCTG
CTTCCCTAGCTCTGGATTATCTGTTCCCACAAGTGGATCAACCCTTGTTG
AAGGGCATGTCTTCCAAATGAGTTTTTAGTGTTAGAGTCTGAAGAGCTGC
AGCAGTCCCTGGACTCCTCCAAGACATCTTCCTATGAGTCAATGTGACTT
CTGCGTCTTCTAGCTTATGTATACATCTCCAGAGTCACTCCAGTCCTTTT
ATTCCAATACTTCCTTGGTTTCAAACCTTAGTCACATTCACGTTCCTTTC
CTGGAAAGTCCGAAACCTTTCCCAGCCCTTTATCTTATGGTTTTTATTTT
CACCCACAATTTCGTTTTACACCATTTCAGGAACACTTTATN

AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTTATTGAACCGAAGTTTCTACTAGTGGTTT
CAAAAGTTTTTGTTGTTGTTGTTGGTGGTGGTGGTTTTTCGCCCCCCCCC
NCTTCCCCCCCCCCCTGCCCCCCCCCCCCCCCCCCCCCCCCCTCCCTCTC
CCTCTCTTCCTCCTCCCTTTCCCTCCTCCCCCCTCTCCCCCCCCCCCCTC
CCCCCCCCCCCCCCNCTTCTTCTCCCCCCCCCCCCCCCCTCCCCCCCCTC
CCCCCCCCCCCTTTTTTCCTCCCCCCCCCCCCCCCCCCCCNTTCCCCCCC
CNCCCCTCCCCCCTTTTCCCCCCCCTTCCTCCCCTCCCCCACCCCCTCCC
CCCCCCCCCCCCCCCCCTCCTCCTCCCCCCCCCCCCCCCCCTCCCCTCCC
CCCCCCCTTCCNCCTTTCCCTTCCCCCCCCCTTCCCCCCCCCATTCCCCC
CTTCCACTCCCCCTTTTCCCCTCTTTTCTCATCCCCCCCCCCCACCCCCC
CCCCCCTCCCCCTCATTCTCCACCACCCAAACCCAACCCCCCACTAAAAT
AAATAATCCACACACCCCCACCCACCCCCAAAACACCACCCCCCATCCAA
CAACTAAACAACCAACACCACCACACCCCAAACACCCCCCCCCACTCCCA
CCCAATACCCCCCCCCACACACAACACACCCAAAACCCAAACATATACCC
CCCTCACCCCAAATACACCAAACAATAACAACCAAACACAACACCAAAAA
CCTAACCAAACACACCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_k10.b1 MSMg01no348_k10.b1 CHROMAT_FILE:
MSMg01no348_k10.b1 PHD_FILE: MSMg01no348_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:01 2005
         (524 letters)



>mm_chr1_41534549_41535472
          Length = 924

 Score =  671 bits (347), Expect = 0.0
 Identities = 390/411 (94%), Gaps = 12/411 (2%)
 Strand = Plus / Minus

                                                                       
Query: 11  gaattcctactttctcactccctgaacaacacttaaatgaaaaacttccacaatgaagta 70
           |||||||||||| || |||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 401 gaattcctacttccttactccctgaacagcacttagatgaaaaacttccacaatgaagta 342

                                                                       
Query: 71  gcagaaaatggtagagttttgaaaagttcttcatgcttatttatttaattttaagttaaa 130
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 341 gcagaaaatggtagagttttgaaaagtacttcatgcttatttatttaattttaagttaaa 282

                                                                       
Query: 131 tctgctcatatagaagtcagggagacaccctttgtgaaccaaagcgtttcctccagtgct 190
           |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 281 tctgctcatatagaagtcagggagacactctttgtgaaccaaagtgtttcctccagtgct 222

                                                                       
Query: 191 gcatgcatgcatgtatgtgcgtgcatgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 250
           |||||||||||||||||||| |||||||          ||||||||||||||||||||||
Sbjct: 221 gcatgcatgcatgtatgtgcatgcatgc----------gtgtgtgtgtgtgtgtgtgtgt 172

                                                                       
Query: 251 gtgtgtgtgtgtgctctca--tgtgtgtgtgtgtaaggggagcttaatggtgtagccctg 308
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 171 gtgtgtgtgtgtgctctcatgtgtgtgtgtgtgtaaggggagcttaatggtgtagccctg 112

                                                                       
Query: 309 cattatcttaaactcgctatgtagactaatctgttttcagacttatgaatttatcttgct 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 cattatcttaaactcgctatgtagactaatctgttttcagacttatgaatttatcttgct 52

                                                              
Query: 369 gcttccctagctctggattatctgttcccacaagtggatcaacccttgttg 419
           ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 51  gcttccctagctctggattatctgtccccacaagtggatcaacccttgttg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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