XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
CACTGAGGAATACCAAATGGCTGAGAAGCACCTAAAAAAATGTTCAAAAT
CCTTAATCATCAGGGAAATGCAAATCAAACAACCCTGAGATTCCATCTCA
CACCAGTCAGAATGGCTAAGATAAAAAATTCAGGTGACAGCAGAAGCTGG
TGAGGACATGGAGAAAGAGGAGCATTTCTCCATTGTTGTTGGGATTGAAA
GCTTGTACAACCACTCTGGAAATCACTCTGGTGTTTCCTCAGAAAATTAG
GCATAGTACTACTGGAGGATCCAGCAATACTTCTCCTGAGCATCTATCCA
GTAGATGTTCCAACTGGTAATAAGGACACATGCTCCACTATGTTCATAGC
AGCCATATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTCTCTCAA
CAGAAGAATGGATACAGAAAATGTGGTAAATTTACACAATGGAGTACTAC
TCAGCTATTAAAAAGAATGAATTTATGAAATTCTTAGGCAAATGGACGGA
CCTGGAGGGTATCATCCTGAGCGAGGTAACACATTCACAAAGGAACTCAC
ATGATATGCACTCATTGATAAGTGGAAATTAGTCCCGAAACTTAGAATAC
CCCAGATACAAGTTGCCATACACCTGAAACTCATGAAGAACGAAGACCCT
AATATGACCATTTCCCCCCCT

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTAAAGAGCTTCCAAAGACAATGGGA
AAATTTGGATACAAATTGGACTATAGAAATTAATAAGATTTTTTTCCTTT
TTACAGTAGTTCAAAATTTACATTTCTAAACATAATATTTCTTATAAAAT
TTATAAAATTCTCTTGCTATTCATTGTATTGCTGTAATACATTGTGGCTC
TAACACATCAAATCCTTCTACATTTCTAAAAAGATTAACTAGAAAAACTT
TTTCATGGAACTGGAGAGATTCTCAGTGGTTCAGAGGAGCCCGTTTGTCT
CTTATAAATATAACAAACTTGAAAACATTATATATGTGTAACACTGATTA
TAATTTAAAAGTCTCTTACTTATAAACACTCTCATTTAAAGTCCTTCCTT
TTTCCACAATCCCAGTGAACACATGGTCAAGTTTGTGGAAGATGATTTCC
CTTGAAAATATTCAGGTAGTGGCACTGCTTTAGAGGCAGCGAGGTCTGCG
AGAACTGAGCAGATAAATGAGGTGGACTAAAGTCTCATGCAATAGCCACC
ATTATTCAGAATCTTAGGCAATTTATATGCTGAAGGGTAAGCCAGGCCAC
ACGAGTAAAGGTCTCCTGACTACCATCACATGGACAAGCCTCCCTGGGCC
AATAATGGTTTTTCCTTAGAGGGATCGTCAGGTTAAT

Query= MSMg01no348_l01.g1 MSMg01no348_l01.g1 CHROMAT_FILE:
MSMg01no348_l01.g1 PHD_FILE: MSMg01no348_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:04 2005
         (437 letters)



>mm_chr1_5899105_5899934
          Length = 830

 Score =  719 bits (372), Expect = 0.0
 Identities = 416/436 (95%), Gaps = 12/436 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaaagagcttccaaagacaatgggaaaatttggatacaaattggactatagaaattaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 ttaaagagcttccaaagacaatgggaaaatttggatacaaattggactatagaaattaat 703

                                                                       
Query: 61  aagattttttt--cctttttacagtagttcaaaatttacatttctaaacataatatttct 118
           ||||   ||||  ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 aaga---ttttcccctgtttacagtagttcaaaatttacatttctaaacataatatttct 646

                                                                       
Query: 119 tataaaatttataaaattctcttgctattcattgtattgctgtaatacattgtggctcta 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 tataaaatttataaaattctcttgctattcattgtattgctgtaatacattgtggctcta 586

                                                                       
Query: 179 acacatcaaatccttctacatttctaaaaagattaactagaaaaactttttcatggaact 238
           |||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 585 acacatcaaatccttcaacatttctaaaaagattaacta-aaacactttttcatggaact 527

                                                                       
Query: 239 ggagagattctcagtggttcagaggagcccgtttgtctcttataaatataacaaacttga 298
           |||||||| ||||||||||||||||||||||||||||||||||||      |||||||||
Sbjct: 526 ggagagatgctcagtggttcagaggagcccgtttgtctcttataa------caaacttga 473

                                                                       
Query: 299 aaacattatatatgtgtaacactgattataatttaaaagtctcttacttataaacactct 358
           |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 472 aaacattatatatgtgtaaccctgattataatttaaaagtctcttactcataaacactct 413

                                                                       
Query: 359 catttaaagtccttcctttttccacaatcccagtgaacacatggtcaagtttgtggaaga 418
           |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 412 catttaaaatccttcctttttccacaatcccagtgaacacatggccaagtttgtggaaga 353

                           
Query: 419 tgatttcccttgaaaa 434
           ||||||||||||||||
Sbjct: 352 tgatttcccttgaaaa 337


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 830
Length adjustment: 9
Effective length of query: 428
Effective length of database: 821
Effective search space:   351388
Effective search space used:   351388
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)