Query= MSMg01no348_m22.b1 MSMg01no348_m22.b1 CHROMAT_FILE:
MSMg01no348_m22.b1 PHD_FILE: MSMg01no348_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:14 2005
(622 letters)
>mm_chr1_29928264_29929282
Length = 1019
Score = 1123 bits (581), Expect = 0.0
Identities = 608/618 (98%), Gaps = 3/618 (0%)
Strand = Plus / Minus
Query: 5 gaattcctgattgcatatagtagatttaaatagtactaaaatggttacatttcatacgta 64
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gaattcctgaatggatatagtagatttaaatagtactaaaatggttacatttcatacgta 626
Query: 65 ttgctgtaaaccaaaaatctttcctttcctcctgaaaattggagaaaactgtcccagagg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttgctgtaaaccaaaaatctttcctttcctcctgaaaattggagaaaactgtcccagagg 566
Query: 125 atggccaagctattgatactaaattttatctggttaaagcatttcaggattgcctagttg 184
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atggccaagctattgatattaaattttatctggttaaagcatttcaggattgcctagttg 506
Query: 185 tttggattacttctgacttatgtttttcctattctatcaggaaacaatgaaaagagacat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttggattacttctgacttatgtttttcctattctatcaggaaacaatgaaaagagacat 446
Query: 245 caaacgaaagataacattcaaaaaaaaagaaaaaaaaaagcctgaattttagaataagaa 304
||||| ||||||||||||| ||||||||| ||||||||||||||||||||||| |||||
Sbjct: 445 caaactaaagataacattc-aaaaaaaag--aaaaaaaagcctgaattttagaacaagaa 389
Query: 305 atagaaactaatcaagtcctttcttttaatttacaggtaagaactgcacgtttgtctata 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 atagaaactaatcaagtcctttcttttaatttacaggtaagaactgcacgtttgtctata 329
Query: 365 atatttacacatgatttattggatcaataattgagacataataaagtgaaaatttatcta 424
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 328 atatttacacatgatttattggataaataattgagacataataaagtgaaaatttatcta 269
Query: 425 taagtatttgtaaaatgttccgcatatatcagaatcaataattacaaacatgaaatcagt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 taagtatttgtaaaatgttccgcatatatcagaatcaataattacaaacatgaaatcagt 209
Query: 485 ttactagaatattcagcctggctctgacttgaaggctcctttctgtggtctacctttcag 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttactagaatattcagcctggctctgacttgaaggctcctttctgtggtctacctttcag 149
Query: 545 tagaagattgagctttgcagtttccaagggactaanacaatcatcaaccttacccagctg 604
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 148 tagaagattgagctttgcagtttccaagggactaaaacaatcatcaaccttacccagctg 89
Query: 605 tgataccttgaatggcaa 622
||||||||||||||||||
Sbjct: 88 tgataccttgaatggcaa 71
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1019
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1009
Effective search space: 617508
Effective search space used: 617508
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no348_m22.g1 MSMg01no348_m22.g1 CHROMAT_FILE:
MSMg01no348_m22.g1 PHD_FILE: MSMg01no348_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:14 2005
(493 letters)
>mm_chr1_29768609_29769504
Length = 896
Score = 899 bits (465), Expect = 0.0
Identities = 488/497 (98%), Gaps = 4/497 (0%)
Strand = Plus / Plus
Query: 1 aatcttaagaggcacttatgatatgaaaatattgaaagagagcacgtggatccatacact 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 aatcttaaaaggcacttatgatatgaaaatattgaaagagagcacgtggatccatacact 259
Query: 61 agactaacacgggaatggaacgcgggaatgaaaaattactgtatgggtagggaacgctag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agactaacacgggaatggaacgcgggaatgaaaaattactgtatgggtagggaacgctag 319
Query: 121 act-cagaaggagagcttccttgaagctcttttgcctcatgagtgacttttaagcctttc 179
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 actccagaaggagagcttctttgaagctcttttgcctcatgagtgacttttaagcctttc 379
Query: 180 ggcctgtccagttgacttggctggagagcgtagcacgttcacatatgacttgtttcttta 239
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 380 ggcctgtccagttgacttggctggagagcgtagcacattcacatatgacttgtttcttta 439
Query: 240 cattaaattttatactcaaaagtatatgtatattttatctggctattcaatttctttcac 299
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cattaaatttcatactcaaaagtatatgtatattttatctggctattcaatttctttcac 499
Query: 300 ttttgtagcgattcacccatttctttttatcacagcctttgtgtacttttcatgatgtag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttttgtagcgattcacccatttctttttatcacagcctttgtgtacttttcatgatgtag 559
Query: 360 ttattatgctcaaaactcaactataaaagtgaataaaacatggcaaagtactctaacagt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttattatgctcaaaactcaactataaaagtgaataaaacatggcaaagtactctaacagt 619
Query: 420 taaaaaattttcagaaaaaaa---ctccattacattaactcatttaatcatacatatagc 476
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 620 taaaaaattttcagaaaaaaaaaactccattacattaactcatttaatcatacatatagc 679
Query: 477 cagaaacattatggaat 493
||||||||||| |||||
Sbjct: 680 cagaaacattaaggaat 696
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 896
Length adjustment: 10
Effective length of query: 483
Effective length of database: 886
Effective search space: 427938
Effective search space used: 427938
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
