XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
ATATAATTTACCTTGATCATGCTCAGCCTCCCCAGCCGATTTCCCACAGA
TCCACCAGACCTTCCTACCCACCCAACTTCAAGGTCTTTGGTTTTTTTAA
AGCCGTGAAGTCCCATTTATTTTACTGAAGGCTCTTCAGAGTTGGCTCTA
CCCAGGAGCAGGGGCCTGCCGAACCAGGAGTCACACAATTAGTAAAAACT
GACTCTTGCTCCCAGCGGCCATCAAACGACAGCAGTTCCTTAGTCCCCCT
CAGAGGGACTTCACGTTCTATCTCCCCTACCTCCATCCTAAGACTTTGTC
TGGCTTGAGCTGGCACAGGTCTTGTTCATCTTTTTACCTCATATGTACAG
CTGCCCTGTTCGGTCCAGAAATCACTGCTTCCTTGAAGTCACCCACCACC
TCTGGCAGTAACAACCTTTTGCCATCTCCTCTGAGGAGGTCTGGTATGAT
CTGGACATCCTAGTTAAGGCTGAGCACACCAAGCCTTCTCCTCTGCGTAT
TGACCACCTGGGGTCCCTGTGAATTGCCATCTGTGCGCCATCTGCGCAAG
ACAAAGCATTTTGATGAAGGTTGAGCAATGCACAGATCTATGGGCATATC
GATGTCACTGGGAATCACCTTAATGTGATGTTTGTATTTTCCACCCATCA
TTATTCAGNCCATTTCAGAAATCTCTGCTCCCAGTCTTATT

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACACTACAACAGGACCCCTCCCTCAGAA
GAAAGGATGGAAGAAGCAAACGAGCAAACAAACAAAAGCCAACACTGGCA
GTTAGTCACCACAGAGTAGTCATTCAAATGATTAAACAAAAATACTAAAC
ACCACTTGTTTTGAAAATTATAGTATGAAATTTATATCTTGTAGTATGAA
AATTATATCTTATATTTTGAATTTATGGTTCAACAATTCTGAACTAATGC
ACACTAAATACAAACTAAAGCATAGCATTTGGTCATGATTTCACCACTGT
AGAGTTTTACCTGTGCCTAACAGGGAGTTTCTGGAGGGTATAAAATACAA
TTTCCTTTACATCACATACCTACTGTAGGGTTCTGCTTCTGTTCCACAAG
ATTTCTTGGTGTTCGGAGATAGTTGGCATTCTCAGACACAACCTGCATAG
AGAAAGTGGAGACTGAAATATACTAACAAAATGAATTCAAAAATGCATAT
TTCATATGCACCCTGTTCCAGACAGACAAAGGTTAATAAGCTGTATGATA
AATATTAGTAGAAATACTTAAAACATGAAAGTTCATGCAAGATCCCCTCT
GAAGGGAGTCCATTTCATATGAGGTCCTCGCAATGAANGGGTGCAAAGCA
GGCATTCATGATGAAACATGGCAGATGAGAAGAAACAATTCCCAGATTGA
TGTAATTTCACTTTCTCCTAAAG

Query= MSMg01no349_a13.g1 MSMg01no349_a13.g1 CHROMAT_FILE:
MSMg01no349_a13.g1 PHD_FILE: MSMg01no349_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:32 2005
         (600 letters)



>mm_chr1_99615864_99616863
          Length = 1000

 Score = 1152 bits (596), Expect = 0.0
 Identities = 599/600 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acactacaacaggacccctccctcagaagaaaggatggaagaagcaaacgagcaaacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acactacaacaggacccctccctcagaagaaaggatggaagaagcaaacgagcaaacaaa 260

                                                                       
Query: 61  caaaagccaacactggcagttagtcaccacagagtagtcattcaaatgattaaacaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaaagccaacactggcagttagtcaccacagagtagtcattcaaatgattaaacaaaaa 320

                                                                       
Query: 121 tactaaacaccacttgttttgaaaattatagtatgaaatttatatcttgtagtatgaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tactaaacaccacttgttttgaaaattatagtatgaaatttatatcttgtagtatgaaaa 380

                                                                       
Query: 181 ttatatcttatattttgaatttatggttcaacaattctgaactaatgcacactaaataca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttatatcttatattttgaatttatggttcaacaattctgaactaatgcacactaaataca 440

                                                                       
Query: 241 aactaaagcatagcatttggtcatgatttcaccactgtagagttttacctgtgcctaaca 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagtaaagcatagcatttggtcatgatttcaccactgtagagttttacctgtgcctaaca 500

                                                                       
Query: 301 gggagtttctggagggtataaaatacaatttcctttacatcacatacctactgtagggtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggagtttctggagggtataaaatacaatttcctttacatcacatacctactgtagggtt 560

                                                                       
Query: 361 ctgcttctgttccacaagatttcttggtgttcggagatagttggcattctcagacacaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgcttctgttccacaagatttcttggtgttcggagatagttggcattctcagacacaac 620

                                                                       
Query: 421 ctgcatagagaaagtggagactgaaatatactaacaaaatgaattcaaaaatgcatattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgcatagagaaagtggagactgaaatatactaacaaaatgaattcaaaaatgcatattt 680

                                                                       
Query: 481 catatgcaccctgttccagacagacaaaggttaataagctgtatgataaatattagtaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 catatgcaccctgttccagacagacaaaggttaataagctgtatgataaatattagtaga 740

                                                                       
Query: 541 aatacttaaaacatgaaagttcatgcaagatcccctctgaagggagtccatttcatatga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatacttaaaacatgaaagttcatgcaagatcccctctgaagggagtccatttcatatga 800


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)