GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTT
TAACTCTGTACCCCACTTTTTAATAGGGTTAATTGGTTTTCTGGAGTCCA
ACTTCTTGAGTTCTTTGTATAATTTGGATATTAACACTCTCTTGGGTGTC
GGGTTGGTAAAGATCTTTCCCCAATCTGTTGGTTGCCATTTTATCCTATT
GACTATGTTCTTTGACTTACAGAAGCTTTGCAATTTTATGAGGTCCAATT
TGTAGGTTGTTGATCTTAAAACATAAGCCATTGGTGTACTGTTCAGGAAA
TTTTGCCATGTGCTCATATGTCTGAGGATTTTCACCACTTACTTTTCTAT
TCATTTTAGTTTATCTGGTTTTGTGTGGGTATCTTTTGTCCACTTGGGCC
TGAACTTTGCTTTCAAAAATATAGTTGTGGAATATATATATATATATATA
TATATATATATATATATATATATATATATATATATATATGNNNANNNANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNN

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTCCTCTGAACCTTTTTTTTTTGTAGGAT
TAACCTAATTTTTATGCTCACCAAACTCTATGTCAGGAAAGAATTCCCCA
AGAGCTTAATTTAAGCCTGGGGGGCATGGATAATACCTTCAATGACCAAG
GTTGTGACTTCAGCTAGAGAAGAATAATGGCACATGACAATAGTGTCAGG
AACTGAGAGGTCTTATTTAATTCTGGGGTCCACACATTCTAATATAAAGC
ATACTATTAAAATGCTGAAAATGAATATTTATAGAAATATTTTTGAACAA
AGGCAAAATGTTATGTTATGTGGAATGAGTTATGTTGACTAAATTATCTC
TCTAGTTGTCATGACGACCTTGTACTTTTTCAACAATATATAGATGATTA
AATGATGAGCTAGATGGGATTTGAAAGCGTTCATAGAGACACATTCCATC
AGAATTGTTGAAAAGGACCACAGAAGTGTCATGCTTCAATACACAACCTA
TTCATATGCTACTCCTAAGTTTAATAAAAATAAGTAAGTGAGGCACTCCA
GATTAACAACATTGGGGGTTTTCCTTGTATATTTTTCATGGNCACCTTTA
GCTTTAAAGTGAGCCCTATCACTGGAAAATGTGACTTTGATTGTTTGGCC
CTTATCAAATGGGAATGACTGGAAATCCCTTCCCCCAAAAAAAATGGCCT
AGGGAAGTTTCCTTAAAAAANNAAAACACCATAAATTTGTTCCAGGG

Query= MSMg01no349_b21.g1 MSMg01no349_b21.g1 CHROMAT_FILE:
MSMg01no349_b21.g1 PHD_FILE: MSMg01no349_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:38 2005
         (503 letters)



>mm_chr1_27958069_27958974
          Length = 906

 Score =  909 bits (470), Expect = 0.0
 Identities = 496/506 (98%), Gaps = 3/506 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcctctgaacc---ttttttttttgtaggattaacctaatttttatgctcaccaaact 57
           |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 tttcctctgaacccttttttttttttgtaggattaacctaatttttatgctcaccaaact 647

                                                                       
Query: 58  ctatgtcaggaaagaattccccaagagcttaatttaagcctggggggcatggataatacc 117
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 646 ctatgtcaggaaagaattccccaagagcttaatttaagcctggggggtatggataatacc 587

                                                                       
Query: 118 ttcaatgaccaaggttgtgacttcagctagagaagaataatggcacatgacaatagtgtc 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ttcaatgaccaaggttgtgacttcagctagagaagaataatggcacatgacaatagtgtc 527

                                                                       
Query: 178 aggaactgagaggtcttatttaattctggggtccacacattctaatataaagcatactat 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 aggaactgagaggtcttatttaattctggggtccacacattctaatataaagcatactat 467

                                                                       
Query: 238 taaaatgctgaaaatgaatatttatagaaatatttttgaacaaaggcaaaatgttatgtt 297
           |||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 466 taaaatgctgaatatgaatatttatagaaatatatttgaacaaaggcaaagtgttatgtt 407

                                                                       
Query: 298 atgtggaatgagttatgttgactaaattatctctctagttgtcatgacgaccttgtactt 357
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 406 atgtggaatgagttatgttgactaaattatctctctagttgtcatgacaaccttgtactt 347

                                                                       
Query: 358 tttcaacaatatatagatgattaaatgatgagctagatgggatttgaaagcgttcataga 417
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tttcaacaacatatagatgattaaatgatgagctagatgggatttgaaagcgttcataga 287

                                                                       
Query: 418 gacacattccatcagaattgttgaaaaggaccacagaagtgtcatgcttcaatacacaac 477
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 286 gacacattccatcagaattgttgaaaaggaccacagaagtgtcatgcttcaacacacaac 227

                                     
Query: 478 ctattcatatgctactcctaagttta 503
           ||||||||||||||||||||||||||
Sbjct: 226 ctattcatatgctactcctaagttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 906
Length adjustment: 10
Effective length of query: 493
Effective length of database: 896
Effective search space:   441728
Effective search space used:   441728
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)