Query= MSMg01no349_i09.b1 MSMg01no349_i09.b1 CHROMAT_FILE:
MSMg01no349_i09.b1 PHD_FILE: MSMg01no349_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:09 2005
(572 letters)
>mm_chr1_162833519_162834490
Length = 972
Score = 919 bits (475), Expect = 0.0
Identities = 478/479 (99%)
Strand = Plus / Minus
Query: 1 gatgtgagatacagaagacaatatgtcccccgagaccaagtctatttaaaagagatgtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gatgtgagatacagaagacaatatgtcccccgagaccaagtctatttaaaagagatgtgg 420
Query: 61 taatctatcaaggggaaagaatttcgtgtgaattttatcccgaaattaataactctttgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 taatctatcaaggggaaagaatttcgtgtgaattttatcccgaaattaataactctttgt 360
Query: 121 aaattttagttagtaaatcaatctctctccccctaatttttctaagttttaacattacta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 aaattttagttagtaaatcaatctctctccccctaatttttctaagttttaacattacta 300
Query: 181 gggtcttcacattaagaattagaaaattaaattagatggtatgctgggtttatatgggca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gggtcttcacattaagaattagaaaattaaattagatggtatgctgggtttatatgggca 240
Query: 241 tataatttaaatttcaaaactttggagattaaagcaccccatagcggtgcacaccgtcag 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 239 tataatttaaatttcaaaactttggagattaaagcaccccatggcggtgcacaccgtcag 180
Query: 301 tccagcactcaagaggcagaggcaagggtatctctgtgagttagccatcttggtctatta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 tccagcactcaagaggcagaggcaagggtatctctgtgagttagccatcttggtctatta 120
Query: 361 gtgaactccaggccagccaaggctacccagtgagaccttgactcataaatgaatggatca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 gtgaactccaggccagccaaggctacccagtgagaccttgactcataaatgaatggatca 60
Query: 421 aatcagtcagtcaatcaaaacttttaaaattaaatttaaaaagtgtattgatgaagaca 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 aatcagtcagtcaatcaaaacttttaaaattaaatttaaaaagtgtattgatgaagaca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_i09.g1 MSMg01no349_i09.g1 CHROMAT_FILE:
MSMg01no349_i09.g1 PHD_FILE: MSMg01no349_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:09 2005
(536 letters)
>mm_chr1_162639600_162640534
Length = 935
Score = 940 bits (486), Expect = 0.0
Identities = 516/530 (97%), Gaps = 9/530 (1%)
Strand = Plus / Plus
Query: 11 acctgcctttacctcccaagtgctaggataaaaggcttgtgccatcactgcctgtctcat 70
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 211 acctgcctttacctcccaagtgctaggataaaaggcttgtgccatccctgcctgtctcat 270
Query: 71 taatcctttaacagcattcttcaaaggaatctagtcactatccattgctaagtacaaatt 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 taatcctttaacagcattcttcaaaggaatctagtcactatccattgctaagtacaaatt 330
Query: 131 caaggaaatgcttcaaagaaaacaagcatcacagagctgcagattaattaaatgaaagtt 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 caaggaaatgcttcaaagaaaacaagcatcacagagctgcagattaattaaatgaaagtt 390
Query: 191 acgtgcattttgaaaacatttgcctgt----taccttaggctcaaaggagagacttgttc 246
||||||| ||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 391 acgtgcactttgaaaacatttgcctgtaaggta----aggctcaaaggagagacttgttc 446
Query: 247 ctgatataccaactagctggagaagacaggccctgtccctgtagctttcaccctacacac 306
|||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 447 ctgagaaaccaactagctggagaagacagaccctgtccctgtagctttcaccctacacac 506
Query: 307 aattgtttgtgtacaaactttctttctttcatagataattttaagtttgagtttccaaat 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aattgtttgtgtacaaactttctttctttcatagataattttaagtttgagtttccaaat 566
Query: 367 ttaattactgccatcacaaaattaaaaataaacaactctgacaacatgacaaaattttaa 426
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 567 ttaattactgccatcacaaaattaaaa-taaacaactctgacaacatgacaaaattttaa 625
Query: 427 aatataaaataactgtcttctgtacttgattaggacacttaggttgtcattaccatatcc 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 aatataaaataactgtcttctgtacttgattaggacacttaggttgtcattaccatatcc 685
Query: 487 agtaaatgcatgtcactgttcttcacgtttcgacctgggcttaataacat 536
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 agtaaatgcatgtcactgttcttcacgtttcgacctgggcttaataacat 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 935
Length adjustment: 10
Effective length of query: 526
Effective length of database: 925
Effective search space: 486550
Effective search space used: 486550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
