BAC Information

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BAC

Clone NameMSMg01-349J14
Chromosome1 (Build37)
Map Location 16,976,674 - 16,977,174
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665434, 4930444P10Rik, Rpl7, Rdh10, EG665282, Stau2, Ube2w, Tceb1, LOC665480, Tmem70, Ly96, LOC100040056, LOC665496, EG545306
Downstream geneJph1, Gdap1, LOC383495, Rbm6-ps1, Ppia-ps1_125.1, Pi15, Crispld1, LOC665564
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349J14.T7 (MSMg01no349_j14.b1)MSMg01-349J14.TJ (MSMg01no349_j14.g1)
ACCAG461416AG461417
length1,253787
length of high quality
(start - end)		---501 (73 - 573)
definitionCHROMAT_FILE: MSMg01no349_j14.b1 PHD_FILE: MSMg01no349_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:15 2005CHROMAT_FILE: MSMg01no349_j14.g1 PHD_FILE: MSMg01no349_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTGTCTTACATATCGACCCCCTCCCACTTATAAGTAGCAACCACAGGTGT
GATTCACATGCGCGAACTTTCACCCCATTAGCCGTGACGATCGTACCAGC
AGAGGAGAGCTAGCCCGTAATGTGGGTAACATAGCAGAGTAACACTATAG
GTAAGATACATCTCCCGCAGTAGATCATGGACATTCTATCGCCTACACTC
AGCGAATCTTTAACCTGCCACGCCTCAATATACACCCATCTCTCAGAATT
CTCTTAACCTGTACTACTCACTATTCCTAACCGCGTAAGTAGCGCCTAAC
ACGAAATGAATACGCAACAACATCGCCATCAGCTCTCGTCCCGCACAAGA
CAAACCGCGCGGTTCCACTATCATTATTACTCATACGGCTTACTTAGCGC
GTCTCAATCTACATGTACACCGCTCACAGACGCCGCCATTAATAATCCCC
GCCACTAATCTCCGCCCTCTCTTCGTCTCTATTTATCGCCTTATTCATAA
AATCCAGATCATATCTGTCCCCGTCCTCACCTTATCACGCGTCTAGAATT
CTCCCCCACTCTTCCCGTTTTTACTCTTCCCTATCTCGCTTCATCGACAC
CCCTGTCTTGCATATACTTCTAATTCATTTACCCAGTACGCACCATTACA
GTCTATTAATCACTGTTATCCCGCGCCTNTGGACCTCATAGACCGGCTGT
AAATATGAATCACACGATTGATTACAATTATCTCCTATCGCCCTCTTTGC
ATCTTCGTTCTAAATAAGCGCTGTTCATATGTGTGCTGGTATCACACCTA
ATTCTCACCTCCTCTTATCCATATGTCCCGCACCCCCACCAAGCGCGCCT
GACATTCTGTCCTATCTCTATACTATTGAACTCATATATGATGTCTTTCT
ATTGCGATGTGATGCCCTCTCGTTCTACCACATGTTTACCACACCTTCCG
ACATTCACATCCGTTAATTTCTCATTGCACCCTCACGCCACCTCACTCTT
CACCTATCTCCACTTCTGTATACTATCACACGCCACCCCCGTATCCGCCC
TAGACCGACCTGATTATCGCTTATTCCAGCGCACCGATATTTCTGTCCAT
TCTCACTACACTCCGACCCGCATATATATCTATCTGCGTACCACGCGTTC
ACTATCTACCATCCGCTCGGTATCNCACCCACTCTATCTCTCCATACCTC
ACTCTATTTTTACTCGCGCACCTCACACGTTATTATGTATACGCGCACAT
GTT

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCTCCACTTTAGTCGGCCCATTTCTCTT
CACCCCATAGTTGCCAGTGCGAAATAAATAAGGAACCAGGATCTGTTACC
TCTGAAATAAACTTCTAGTATTCATTATGCTGTCTAACCAGCTTAAGTGT
AATGTCTTATCAGAGTGCTGAGAAACCATTGGTGCAGCCATGGTGGATGG
TCTGCTGGCCTTATTAGATATAGGAACAAGTTGCTTACCAAACCAATTGC
ACAAAATTACTCAGCCACAACTTTGAGAAGTGGGAGCAAATGGCATCTCA
ACAGTACTTTTGTAAATCTCAAGATATCTTTCTCTCCCATAAGTCAACAC
CCTTTCTCCATGTAGCATAGAGGCACTGACAATGAAAACCAGAACTAGAC
AGTAGGATCCTCAAAGTATGTTATGGAAAAATGGCTACTTTGCAGGAGCT
TGAGGATCCAAGGGCAGAATTGTTTTATGCATTAATCAGCTAGTTAATGC
TATATATGTGTGGCATTGTCTCAGACAATAGGGCATAAGATATAAAGTCT
CTGCCCGTTTCTCTTAGAAATGCAGTTTTGGGTAGAGATAGAAAACCAGA
ACATTTTCTAACAGAGTTGAGGACCAACAGGGTACAGGGGTCTCTTGAGG
AAGGAATCTCCTGCCCCCTGGGAGAACTATGATTAAGAAAACCGCCTGGC
CCGGTTTAATAAAAATGTGAAGTTCCAGTCCTACCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_j14.g1 MSMg01no349_j14.g1 CHROMAT_FILE:
MSMg01no349_j14.g1 PHD_FILE: MSMg01no349_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:15 2005
         (501 letters)



>mm_chr1_16976474_16977374
          Length = 901

 Score =  953 bits (493), Expect = 0.0
 Identities = 499/501 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctccactttagtcggcccatttctcttcaccccatagttgccagtgcgaaataaataag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctccactttagtcggcccatttctcttcaccccatagttgccagtgcgaaataaataag 260

                                                                       
Query: 61  gaaccaggatctgttacctctgaaataaacttctagtattcattatgctgtctaaccagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaccaggatctgttacctctgaaataaacttctagtattcattatgctgtctaaccagc 320

                                                                       
Query: 121 ttaagtgtaatgtcttatcagagtgctgagaaaccattggtgcagccatggtggatggtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaagtgtaatgtcttatcagagtgctgagaaaccattggtgcagccatggtggatggtc 380

                                                                       
Query: 181 tgctggccttattagatataggaacaagttgcttaccaaaccaattgcacaaaattactc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgctggccttattagatataggaacaagttgcttaccaaaccaattgcacaaaattactc 440

                                                                       
Query: 241 agccacaactttgagaagtgggagcaaatggcatctcaacagtacttttgtaaatctcaa 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 agccacaactttgagaagtgggagcaaatggcatctcaacagttcttttgtaaatctcaa 500

                                                                       
Query: 301 gatatctttctctcccataagtcaacaccctttctccatgtagcatagaggcactgacaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatatctttctctcccataagtcaacaccctttctccatgtagcatagaggcactgacaa 560

                                                                       
Query: 361 tgaaaaccagaactagacagtaggatcctcaaagtatgttatggaaaaatggctactttg 420
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 tgaaaaccagaactagacagtaggatcctcaaagtatgttatggaaaaattgctactttg 620

                                                                       
Query: 421 caggagcttgaggatccaagggcagaattgttttatgcattaatcagctagttaatgcta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caggagcttgaggatccaagggcagaattgttttatgcattaatcagctagttaatgcta 680

                                
Query: 481 tatatgtgtggcattgtctca 501
           |||||||||||||||||||||
Sbjct: 681 tatatgtgtggcattgtctca 701


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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