BAC Information

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BAC

Clone NameMSMg01-349M15
Chromosome1 (Build37)
Map Location 35,294,534 - 35,295,038
singlet/doubletsinglet
Overlap genenone
Upstream geneDst, LOC100040913, LOC383629, LOC100040938, Ccdc115, Imp4, Ptpn18, Tesp1, Cfc1, Tesp2, 9430069J07Rik, AA619741, Arhgef4, BC043098, Plekhb2, LOC666261
Downstream geneLOC100041544, LOC666283, LOC100041091, EG666290, Hs6st1, Ugcgl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349M15.T7 (MSMg01no349_m15.b1)MSMg01-349M15.TJ (MSMg01no349_m15.g1)
ACCAG461560AG461561
length770765
length of high quality
(start - end)
407 (61 - 467)506 (69 - 574)
definitionCHROMAT_FILE: MSMg01no349_m15.b1 PHD_FILE: MSMg01no349_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:31 2005CHROMAT_FILE: MSMg01no349_m15.g1 PHD_FILE: MSMg01no349_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTT
GTTTATCCCTGTACCCCATTTTTAATGGGGTTATTTGAATTTCTGGAGTC
CAGCTTCTTGAGCTCTTTGTGTATATTGGATATTAGTCCCCTATCAGATT
TAGGATTGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTA
TTGGCAGTGTCTTTTGCCTCATAGAAGCTTTGCAATTTTATGAGGTTCTA
TTTGTCAATTCTTGATCTTTTTTTTCTGTTATAATGTCTCCCTTTTCTTT
TATTTTTTTTATACTTTTTATCAGGTATTTTCCTCATTTACATTTCCAAT
GCTATCCCAAAAGTCCCCCATACCCTCCTACCCACTCCCCTACCCACCCA
CTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGGGGCATATAAAGTTT
GCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTACGCCATCTTT
TGATACATATGCAGCTAGAGTCAAGAGCTCCCGGTTACTGGTTAATTCAT
AATATTGTTCTACTTGTAGGGCTTTAGATCCCTTTAACTCCTTTGTGCAT
TTTCCCTAGCTTCCTCCATTGGGTGGACCCTGTGATTCCCTCCCTTTCCT
TGATTGGGCAGCATCCATCTTTTTGGTTTTTGCCTAAGCCCCCTGTTTTC
TTCCCCACCTATACACAGTCTTTTTCCGTGGTTTTCTTTTTCAACTTTAC
TTCTCTTTCTACGTATATCG
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGGTCCTGGGGTAGGTCCATTTTCTAAAGGAC
ACAATGCAATTAATGAACTGAGGTGGAGGCAGAATAGGAAACTCTGTTGT
TCTGTCCATCTTCTTACTGAAAGAATATAATTTTTCTACAAATGAAATTA
TTATTTATTTATAATAGTAGTAAGTTTATATATGAAGATAAATTATAGTT
AAATATGAATACTATTCATGGGGCATATAAATATATGTTTTCACTCTACA
TATGGTCCGCTAGCCATCCTAATAGTCTTGTTTGTAGTATATATAGGAGG
GGCTAGAGTTTTTGTGTAGGGCACTCTATGCTGAAATTTTTGACAATCAT
CAAGTCAGGCCCAGGTATATAAGGCTGAAGAGCTCTTATCTGTCCCCATG
CCCACTTATTCTTTCTCTGATCTTCTGATATGGGAAGAGTTGGGGGGGTC
TTTGAACTCACTAGAGACTTTCTGTCTTTCCTCAGGAAGGTGTGAGTTCA
GGAGTTAGGGTGCCAAATGTTCATGTTCACACAGAACTTACGCTGTCACT
GCCTTCAGGTTTGTGCCTCTTGAATTCAAAGACTTGAATTGATGGGCAGC
CAAAAGATGAGTTTCCAAAGGAGTTTTATTGTACATCTCCAGGCGCAGAC
CTTCGTACACAACATTTCACCTTCCTGCCCACCTTGTACTGGTTCTTTCC
CTACATGCGTACTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_m15.g1 MSMg01no349_m15.g1 CHROMAT_FILE:
MSMg01no349_m15.g1 PHD_FILE: MSMg01no349_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:31 2005
         (506 letters)



>mm_chr1_35294186_35295090
          Length = 905

 Score =  963 bits (498), Expect = 0.0
 Identities = 504/506 (99%), Gaps = 1/506 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggtcctggggtaggtccattttctaaaggacacaatgcaattaatgaactgaggtggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 aggtcctggggtaggtccattttctaaaggacacaatgcaattaatgaactgaggtggag 794

                                                                       
Query: 61  gcagaataggaaactctgttgttctgtccatcttcttactgaaagaatataatttttcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 gcagaataggaaactctgttgttctgtccatcttcttactgaaagaatataatttttcta 734

                                                                       
Query: 121 caaatgaaattattatttatttataatagtagtaagtttatatatgaagataaattatag 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 caaatgaaatgattatttatttataatagtagtaagtttatatatgaagataaattatag 674

                                                                       
Query: 181 ttaaatatgaatactattcatggggcatataaatatatgttttcactctacatatggtcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ttaaatatgaatactattcatggggcatataaatatatgttttcactctacatatggtcc 614

                                                                       
Query: 241 gctagccatcctaatagtcttgtttgtagtatatataggaggggctagagtttttgtgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gctagccatcctaatagtcttgtttgtagtatatataggaggggctagagtttttgtgta 554

                                                                       
Query: 301 gggcactctatgctgaaatttttgacaatcatcaagtcaggcccaggtatataaggctga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gggcactctatgctgaaatttttgacaatcatcaagtcaggcccaggtatataaggctga 494

                                                                       
Query: 361 agagctcttatctgtccccatgcccacttattctttctctgatcttctgatatgggaaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 agagctcttatctgtccccatgcccacttattctttctctgatcttctgatatgggaaga 434

                                                                       
Query: 421 gttgggggggtctttgaactcactagagactttctgtctttcctcaggaaggtgtgagtt 480
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gtt-ggggggtctttgaactcactagagactttctgtctttcctcaggaaggtgtgagtt 375

                                     
Query: 481 caggagttagggtgccaaatgttcat 506
           ||||||||||||||||||||||||||
Sbjct: 374 caggagttagggtgccaaatgttcat 349


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 905
Length adjustment: 10
Effective length of query: 496
Effective length of database: 895
Effective search space:   443920
Effective search space used:   443920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)