XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTGGTCTGGTCCTTGTTATTACACTGGTAACAATCCTTGGCTTGTGATGC
ATGTGTTTGTGTTACTGCCACACTCCTTAATGATGTCATAGCTATTTCTA
CTACCTCTACAGTCATTCAGGACATTAGGCTCGATGCAAACCAGGGTATC
TGGCACTGAGGACGATCCATGGAAGGACTTAGGACATGACACTTTACAGA
ACAAGCAACAACACCTGGACACTGTAACTTTTAAAGTATCTTGCGAATAA
AAAGCAGAATTTGCAAGGCTTTTATAATAAAGTTGGAGTTAAAAAATGTC
TCAAGGCCTTAAAGCCCACACACATACATACCTGGTTGAATCTATTTTCC
TAACAACATGTTTCCTTAAACAGAGGTCAGCAAACATCTTCCCCTGAGCC
TTACCCCAAACTTTTTATTTTTGCTGCTTTATTTTGAAACAAGGTTTTGA
TCAGTTTCTCAGGTAGCCTCAGGCTCTATTTGTAACTCAGACTGGCCTTG
AATTTGCAGTCCTCTTGTTTTAGCCTCTAATGGCGCTGAGATTAAAGACA
GGTATCACTGTGGCTTTGTAAAAAATAAATAAATAAATAAATAAATAAAT
AAATAATTAAATAAATAATTAAAATAAAATCCCAAGGGAAGCTTAAACTC
AGGGGAGAAAAATGAATAACAGAGTTGAGGTAGAATTAT

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTATTGTGATTCAAACAAATGTTGTT
AAATTTATTATGATGCATTTCTAGATTTTCTTTGATGGTATAAGTAAATA
TATACTTTTAACTTCTTAACACACACACACACACACATATGTGTGTGTGT
GTGTGTGTGTATATATATATATATATATATATATATATATATATATATAT
ATATATATATATACACACACACACACACATACGTGTGTGTGTGTGTGTGT
GAGAGAGAGAGATATATATATATATATATATACACAAAATATAAGTATAT
ATGTGTATATATATATATATATATGTGTGTGTGTGTGTATATATATATAT
ATATATGTATATATATATATATATATATATATATACAGGCGGGTGGGGGC
GTGCGCGACCCTAAATATAGAGAGAAATAGAGAGATATATATATATATAT
ATACATATATACACATATATTTATGCCTACCCCCTCTGACTCTCAATGGA
AGCTGCCCCCAATGATGCTCCGGAATCCGTGTAACGTCGGTTAAGCTTCT
TTCCACCTCCCTGTCTTGGTTTACCCTACCCTGACGGTCCCCCAATAATT
CTTCCACGGCACCCCCTTTAATCCCCTTTCGTTTCTGTTCCTTTCCTTTT
TTCGCGTCCATTCCCCTCGCTTCTTGCGCCCCTTTTCCCCCCATCTCCCC
TGCATCCCCTCCCCTTTGCTCG

Query= MSMg01no349_o23.b1 MSMg01no349_o23.b1 CHROMAT_FILE:
MSMg01no349_o23.b1 PHD_FILE: MSMg01no349_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:42 2005
         (610 letters)



>mm_chr1_41414964_41415973
          Length = 1010

 Score = 1120 bits (579), Expect = 0.0
 Identities = 600/607 (98%), Gaps = 1/607 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttggtctggtccttgttattacactggtaacaatccttggcttgtgatgcatg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 ggaattcttggtctggtccttgttattacactggtaacaatccttggcttgtgatgcatg 631

                                                                       
Query: 64  tgtttgtgttactgccacactccttaatgatgtcatagctatttctactacctctacagt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 630 tgtttgtgttactgccacactccttaatgatgtcatagctatttctactacctctactgt 571

                                                                       
Query: 124 cattcaggacattaggctcgatgcaaaccagggtatctggcactgaggacgatccatgga 183
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tgttcaggacattaggctcgatgcaaaccagggtatctggcactgaggacgatccatgga 511

                                                                       
Query: 184 aggacttaggacatgacactttacagaacaagcaacaacacctggacactgtaactttta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 aggacttaggacatgacactttacagaacaagcaacaacacctggacactgtaactttta 451

                                                                       
Query: 244 aagtatcttgcgaataaaaagcagaatttgcaaggcttttataataaagttggagttaaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aagtatcttgcgaataaaaagcagaatttgcaaggcttttataataaagttggagttaaa 391

                                                                       
Query: 304 aaatgtctcaaggccttaaagcccacacacatacatacctggttgaatctattttcctaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 aaatgtctcaaggccttaaagcccacacacatacatacctggttgaatctattttcctaa 331

                                                                       
Query: 364 caacatgtttccttaaacagaggtcagcaaacatcttcccctgagccttaccccaaactt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 caacatgtttccttaaacagaggtcagcaaacatcttcccctgagccttaccccaaactt 271

                                                                       
Query: 424 tttatttttgctgctttattttgaaacaaggttttgatcagtttctcaggtagcctcagg 483
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tttatttttgctgttttattttgaaacaaggttttgatcagtttctcaggtagcctcagg 211

                                                                       
Query: 484 ctctatttgtaactcagactggccttgaatttgcagtcctcttgttttagcctctaatgg 543
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ctctatttataactcagactggccttgaatttgcagtcctcttgttttagcctctaatgg 151

                                                                       
Query: 544 cgctgagattaaagacaggtatcactgtggctttgtaaaaaataaataaataaataaata 603
           |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 150 cgctgagattaaagacaggtgtcactgtggctttgtaaaaa-taaataaataaataaata 92

                  
Query: 604 aataaat 610
           |||||||
Sbjct: 91  aataaat 85


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 8
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)