BAC Information

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BAC

Clone NameMSMg01-350B11
Chromosome1 (Build37)
Map Location 173,332,294 - 173,332,623
singlet/doubletsinglet
Overlap geneArhgap30
Upstream geneNos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4
Downstream geneUsf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350B11.T7 (MSMg01no350_b11.b1)MSMg01-350B11.TJ (MSMg01no350_b11.g1)
ACCAG461788AG461789
length817773
length of high quality
(start - end)
333 (53 - 385)430 (83 - 512)
definitionCHROMAT_FILE: MSMg01no350_b11.b1 PHD_FILE: MSMg01no350_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:54 2005CHROMAT_FILE: MSMg01no350_b11.g1 PHD_FILE: MSMg01no350_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTTATGCTCCACTTGGTCCACATGGCCTCATTTAGTGC
CCAAACCAACATGCATGCTCGCAATCTGGCAATTGTGTGGGCCCCCAACC
TGCTGAGGTGGGTGCGTGTATGAGCAGTGTGAATGAAGCTCCTGGGAGGC
TAAATGTACACAGATGGGTGTGGTTGTGTAGGTGTACTGGAGAAGGGTTT
TGAGGAGGGTCTCATAAACCCAGCAAGGCAGGAAAGTTCAGCAGCAGCCA
AGTGGTACACAGTCCACTGACTTGGTCCTTCTCTGAGACTGAGTGAGGTT
GTTAAGAGCTAGGCCTCTGTTTCTTTCCACGGGGCTGTGGAGTTCAGGGG
CTAGAATCTTGCTTTTTGCCAACCACCTCTTGAGTAAACATCCTTACAAT
CTATTCCAGATCTGTCCTTGATTTTCATTATGTTCTTCTTTCCCATATCC
TTTATTCACACTTTTCTCTAAGCCCCTTCCTTCTTGCGTTACCCCACCAC
CCAATTCTTCTATCTATATCTTGCCTCAATATTTTCCTCCTTTTCTACAC
CCCTTCTTTTCCTCTATCTCTCATTCCCTTTTCTTTCCTCACTCCTTTTT
TCTTCCTCTCTTTCCTAATATATCCTCCTATTTCTCTCTTTTCCATTTTT
TTTTTCTCCTCTCATATTTTTCTTTCACTCTCCCCTCTTTCCATCCCCCT
ACCCCTTTATTTTTTTCTTCTCCCCCCCTTTTCCTTTTTTCCTTTTCTCT
TTTCCACTCTTTCTTAT
NTTTTTACGATGATACGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGGCAGAGTTAT
AAAGTAACCCTGTCTTGAAAACAAAAACAAAAACAATAAAAAATAAAACC
AAAAATCTCCTTGGGCTGGAGAGATTGTTCAGCAATTTAGAGTACTGAAT
ATTGTTTCAGAGAACCCTGGTTCGATTCCCAGCACCCAATGGCAGCTGGT
CTGTAATTTTCAGTGCTAGAAGATCTGATGCCTTCACACAGACATAAATG
CAGGCAGAACACCAATGCAATGAAATAAAAATAAACAAAAAAAGATTACC
ATACAAAGTAAGGGGTTTTATTATAGTACTTTCTTTTTTCTTTTTCTTTT
TTTAAAGATTTATTTATTTATTTTATGTATATGAGTACTCTATTGCTCTC
TTCAGACACACCAAAAGAGGGCATCAGATACCATAACAGATGGTTGTGAG
CCACTATGTGGTTGCTGGGAACTGAACTCATAACTTTCTAAGAGCAGTCT
TTGCTCTTTAAACATCTCTCCCAGCACTATTATGTGCTTTTTCCCCCACT
ATGTTCCCCAATTTTCTATTTCTTGTTCTTCAGGGAAGATTATTAATTTG
AACCCCGCAAAAAAATCTTTGAAGATAAATCAATTCTTTCGTATTGGCTA
TCATTCATGAGTTAGAACCATACTTTTTTATTTATTTCTTTACTCTTTCC
TACCTCTTCTCTTTACTACTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_b11.b1 MSMg01no350_b11.b1 CHROMAT_FILE:
MSMg01no350_b11.b1 PHD_FILE: MSMg01no350_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:54 2005
         (333 letters)



>mm_chr1_173332091_173332823
          Length = 733

 Score =  623 bits (322), Expect = 0.0
 Identities = 328/330 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccttatgctccacttggtccacatggcctcatttagtgcccaaaccaacatgca 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccttatgcgccacttggtccacatggcctcatttagtgcccaaaccaacatgca 263

                                                                       
Query: 64  tgctcgcaatctggcaattgtgtgggcccccaacctgctgaggtgggtgcgtgtatgagc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgctcgcaatctggcaattgtgtgggcccccaacctgctgaggtgggtgcgtgtatgagc 323

                                                                       
Query: 124 agtgtgaatgaagctcctgggaggctaaatgtacacagatgggtgtggttgtgtaggtgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agtgtgaatgaagctcctgggaggctaaatgtacacagatgggtgtggttgtgtaggtgt 383

                                                                       
Query: 184 actggagaagggttttgaggagggtctcataaacccagcaaggcaggaaagttcagcagc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 actggagaagggttttgaggagggtctcataaacccagcaaggcaggaaagttcagcagc 443

                                                                       
Query: 244 agccaagtggtacacagtccactgacttggtccttctctgagactgagtgaggttgttaa 303
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 444 agccaagtggtacacagtccactgacttgggccttctctgagactgagtgaggttgttaa 503

                                         
Query: 304 gagctaggcctctgtttctttccacggggc 333
           ||||||||||||||||||||||||||||||
Sbjct: 504 gagctaggcctctgtttctttccacggggc 533


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)