BAC Information

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BAC

Clone NameMSMg01-350D13
Chromosome1 (Build37)
Map Location 190,531,932 - 190,532,350
singlet/doubletsinglet
Overlap geneUsh2a
Upstream geneEsrrg, 9330162B11Rik
Downstream geneKctd3, Kcnk2, LOC100042424, LOC100039307, Cenpf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350D13.T7 (MSMg01no350_d13.b1)MSMg01-350D13.TJ (MSMg01no350_d13.g1)
ACCAG461885AG461886
length784964
length of high quality
(start - end)
455 (52 - 506)---
definitionCHROMAT_FILE: MSMg01no350_d13.b1 PHD_FILE: MSMg01no350_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:05 2005CHROMAT_FILE: MSMg01no350_d13.g1 PHD_FILE: MSMg01no350_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAAGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTTTTGTTCCATCAGATTCTTTTTTATAAAAAGTGTTA
TTTTTATGTGTCTGAGATTTTGTCTGTCTGTCGTCTGTCTGTGTATCCCC
ATGGGTGCCATACCCACTGAGGCCAGAAGAGGGTGTTGGATCCCTTAGCA
CTAGAGATCCATATGCTTTTGAGTCACCATGTGGGCAGTCATTTCCAAGA
GCAACCGGTGCTCCTAACCACTGAACCATCTGTCCAGTTTTGAATCATAC
ACTCAAGCAGTTCTTTCTGTCATTCCTATTAACCTTACCTCATACCAGCA
AGCATCTCTGGGACTAACGAAGTTCAAAGAAAGGTCACACAGAAGCAAGT
TCACATGGAAGCAATATTAGTTTAGTCAGAAGTTCTGTGAGAATGCATTC
AGGTTGCTATGTTATATTCCGGAGTCCCTCCTCATGTGTAGAAACTGATG
TGACACTGTCAGAAAAAGATGCACCATGTATAAGACGTCCAAACCGGGAA
AAGCAGCCTGTGTTTTCTCAGGGGTCTTTCCTGTCCAATAGACCCACATT
TTCCGGCAAACTGGGTGGAATCTTAATTCAGGGGGGGCTGGCCCTTTTCT
CCCCAATATTTCTCAAACCTGGTTTTATAAACTTTTTTTTCTCTCCATTT
TTTTGCTTTGTGCTTCCCTTTTTTTATTTTTTTTCTCTTACCCCTTTCTC
ATATTTTTTTATTCCTTTTGCGGTATTTATGATT
ATGATGTCTGATGCTCTCTCCCTCTCTCGCCGCGTTCTAGGTATAAAACC
CTGCCTTCGCAGTTACCTTAGCGTGCTCGCGGCACTCCTCCGCCCTCCGC
CGCAAGGACACCCGCATTACCTAATACCTGGCCAGCGGTGGCGCGAATGT
GCGGATAGGCGGCACCGGTCGCCGCGTGGGGTGCGCTGCCGCTCGGCTGC
CCTCGTTATCTCGTCACTATACTCTGAGGAGGTCGCGTGTGTCTGTTAAT
ATATCTAACTTCTCTTGTCTCGTACATTCCACCCGCGCTCTCGCGCTACG
TCTATGAAATCATTATAACATCCAATATGTTAGAATTTAATTGGGATGTG
CTGTATAGACCTTGTTATCTTGGTTCTTGTCCCTTGCTGCGCGCGCGGAT
AGGGAGGGGCTGCACAATTAGTAAACACGTTCTCACTACTCCGTCGAATG
ACGTATAAGGCGGAACGAGGGGCTTGGAGAGAGGGAGGGGGGGATGAAGG
GCGAGCGAGGCGCTAGACGGCGTAGGACGCGCGCGGCACAGTCGCACGAG
AAATGTAAGCAACTCTCATGATGATTACTACGCAAGCAGCCGACGGATCG
AAACGCGACAGCTGAACGCGGAAATTTTTTAGAATGATGAATGAGCCTTA
CCAGTCAAGCTGCAGATTGTTGACGCGTGTAGACCGAGGAATACCAATGT
ATAATATATCCGCGTGACAGCGAATATGGGGCGCCCGGTTGCGGAGCGCC
GGATTACACGCTATGGCTCACCTGCGCGTGTCAGGCGATGAGGCGAAGGA
GCGCATAGAATGCGCTCAGGACGGGACGAAGAGACAACACTGCGCAGCGG
CACGGGGATTCGGATATAGATGCTGCTCAGGTTATAATCAATGATTGGCT
GCAGCCATAGATGAGTAGGGGTCCCTCTGCGTGCCAGGGTGCGCCGAACC
GGCTACGCGTCGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_d13.b1 MSMg01no350_d13.b1 CHROMAT_FILE:
MSMg01no350_d13.b1 PHD_FILE: MSMg01no350_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:05 2005
         (455 letters)



>mm_chr1_190531496_190532350
          Length = 855

 Score =  735 bits (380), Expect = 0.0
 Identities = 410/420 (97%), Gaps = 2/420 (0%)
 Strand = Plus / Minus

                                                                       
Query: 32  tttttataaaaagtgttatttttatgtgtctgagattttgtctgtctgtcgtctgtctgt 91
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 tttttataaaaagtgttatttttatgtgtctgagattttgtctgtctgtcgtctgtctgt 796

                                                                       
Query: 92  gtatccccatgggtgccatacccactgaggccagaagagggtgttggatcccttagcact 151
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 gtatccccatgggtgccatacccactgaggccagaagagggtgttggatcccttagcact 736

                                                                       
Query: 152 agagatccatatgcttttgagtcaccatgtgggcagtcatttccaagagcaaccggtgct 211
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ggagatccatatgcttttgagtcaccatgtgggcagtcatttccaagagcaaccggtgct 676

                                                                       
Query: 212 cctaaccactgaaccatctgtccagttttgaatcatacactcaagcagttctttctgtca 271
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 675 cctaaccactgaaccatctgtccagttttgaatcatatactcaagcagttctttctgtca 616

                                                                       
Query: 272 ttcctattaaccttacctcataccagcaagcatctctgggactaacgaagttcaaagaaa 331
           ||||||  ||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 615 ttcctaggaaccttacctcataccagcaagtgtctctgggactaacgaagttcaaagaaa 556

                                                                       
Query: 332 ggtcacacagaagcaagttcacatggaagcaatattagtttagtcagaagttctgtgaga 391
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ggtcacacagaagcaagttcacatggaagcaatattagtttagtcagaagttctgtgaga 496

                                                                       
Query: 392 atgcattcaggttgctatgttatattccggagtccctcctca-tgtgtagaaactgatgt 450
           | ||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||
Sbjct: 495 acgcattcaggttgctatgttatattccggaatccctcctcact-tgtagaaactgatgt 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)