Query= MSMg01no350_d23.b1 MSMg01no350_d23.b1 CHROMAT_FILE:
MSMg01no350_d23.b1 PHD_FILE: MSMg01no350_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:07 2005
(482 letters)
>mm_chr1_42746441_42747324
Length = 884
Score = 859 bits (444), Expect = 0.0
Identities = 474/488 (97%), Gaps = 10/488 (2%)
Strand = Plus / Minus
Query: 1 gaattcatctaggtttgcaa-attataggaatcctgtaagcaagagacacttgctcaaat 59
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gaattcatctaggtttgaaagattataggaatcctgtaagcaagagacacttgctcaaat 582
Query: 60 acacgtataccatatgatttcacactggaccttacacatttggcgtcagaagatgcagtg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 acacgtataccatatgatttcacactggaccttacacatttggcgtcagaagatgcagtg 522
Query: 120 ttaggtttgtgctaataaactcaagtggagaattgaggaaggtttcatgcgaaccaaacc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ttaggtttgtgctaataaactcaagtggagaattgaggaaggtttcatgcgaaccaaacc 462
Query: 180 actgccttcctcctcagctctgcattgcagacaaaagatttccaggagaagtccacagag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 actgccttcctcctcagctctgcattgcagacaaaagatttccaggagaagtccacagag 402
Query: 240 tgggacaagtcccaagcttagcttgctctgcatgctca----tttttgttcagagcattc 295
|||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 401 tgggacaaaccccaagcttagcttgctctgcatgctcagggc----tgttcagagcattc 346
Query: 296 agaacgtattagtagggaggggacactttg-tttttttattcatccatatcgcaaaacat 354
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 345 agaacgtattagtagggaggggacactttgttttttttattcatccatatcgcaaaacat 286
Query: 355 tggtgaaggtctccgtgttcttcatacagcatgttctcctgtgttatagtttcttggagc 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tggtgaaggtctccgtgttcttcatacagcatgttctcctgtgttatagtttcttggagc 226
Query: 415 tgtggttgtctaagcagctggctgttctctctctctctctctctctctctctctctctct 474
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 225 tgtggttgtctaagcagctgtctgttctctctctctctctctctctctctctctctctct 166
Query: 475 ctctctct 482
||||||||
Sbjct: 165 ctctctct 158
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 884
Length adjustment: 10
Effective length of query: 472
Effective length of database: 874
Effective search space: 412528
Effective search space used: 412528
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no350_d23.g1 MSMg01no350_d23.g1 CHROMAT_FILE:
MSMg01no350_d23.g1 PHD_FILE: MSMg01no350_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:07 2005
(402 letters)
>mm_chr1_42558416_42559217
Length = 802
Score = 770 bits (398), Expect = 0.0
Identities = 401/402 (99%)
Strand = Plus / Plus
Query: 1 cacagctcttcaaatgagtaacttttgttcagatgacaaaatgcttgtggcacattttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacagctcttcaaatgagtaacttttgttcagatgacaaaatgcttgtggcacattttga 260
Query: 61 gtaagttgaatagctgtactttgctctattttctgggtatacactgaagcaaagtaacag 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaagttgaatagctgtattttgctctattttctgggtatacactgaagcaaagtaacag 320
Query: 121 tgaccaccactggagcttgggacaggacaggtaaaagtagaattaaataggatcctacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaccaccactggagcttgggacaggacaggtaaaagtagaattaaataggatcctacag 380
Query: 181 ttgaagtgtggatgcccttttgcagccatagaacatccatatatttgaccggcagcttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgaagtgtggatgcccttttgcagccatagaacatccatatatttgaccggcagcttta 440
Query: 241 agcactcactaggtccacactgggatctgttgacacaaaggtgtgtatgttcttttttgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcactcactaggtccacactgggatctgttgacacaaaggtgtgtatgttcttttttgt 500
Query: 301 atttgttttgagggttttgatgtcaccaaacttaatttgctcacaggctcacacccagcg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atttgttttgagggttttgatgtcaccaaacttaatttgctcacaggctcacacccagcg 560
Query: 361 ttgataagtatagggagagaggtatggctatttgaaacagag 402
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgataagtatagggagagaggtatggctatttgaaacagag 602
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space: 311649
Effective search space used: 311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
