BAC Information

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BAC

Clone NameMSMg01-350E13
Chromosome1 (Build37)
Map Location 109,664,333 - 109,664,815
singlet/doubletsinglet
Overlap genenone
Upstream geneVps4b, Serpinb5, LOC671141, Serpinb12, Serpinb13, LOC666394, Serpinb3a, Serpinb3d, LOC100041276, Serpinb3b, EG666401, Serpinb3c, LOC666414, Serpinb11, Serpinb7, Serpinb2, Serpinb10, Serpinb8
Downstream geneLOC435640
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350E13.T7 (MSMg01no350_e13.b1)MSMg01-350E13.TJ (MSMg01no350_e13.g1)
ACCAG461933AG461934
length7291,228
length of high quality
(start - end)
485 (58 - 542)---
definitionCHROMAT_FILE: MSMg01no350_e13.b1 PHD_FILE: MSMg01no350_e13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:09 2005CHROMAT_FILE: MSMg01no350_e13.g1 PHD_FILE: MSMg01no350_e13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNAAGGGNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCTCTCTGCATTTGGATAGGATCATTTATTGCAAG
TTTATTCAAGTTGTTCCAGGCTCATAACCAACATTATCTTTAAAAAAAAA
AAACCAAAAAACCAAAAAAAAAAAAAACCAAACAAACAAACAAAAAACCA
AAACAATGACTAATGGCTGAGCTTTATATAGAAAGAAGACACACAGGGTA
AAATGGAAGCTGACAAGCATCACAAAATTGCTGCCAAAGATGAAGCACTA
AGGATACCGTGGCCAAGGCTGAGAAAATTTCCACAGAATCACCAAACCAA
GTTGTGAATAAAAATAAAATCAAACGTGGGGAAAGGTGAAGGGGAAAGTG
AAGCAGAAATAAAGAACCTTTGCATTTTCACATGACAAAAATCTAATTAG
AGAAGAAATTGCAACCATTAGTCAGATTGTTGTGAACTGTGAAGCAACAC
AGGGCAACTTGAGAAAGGGCTGTCTGCAGTTCCCCCGAGCTGGGACACAG
CCACATAGGGCAAGATATAAATAACTTTCCTCTAACATGTGGCTTGACTT
TTGGCTGCTCATTTGTGCCCACTGACCCAAACTAGAGATTTTACAACCAA
CCTTGAAATGCTTTTTAAAAAACTATTATTATTTTTTTTGGTAATTTAGA
ATTCAAAAGGGGGAAGAAAACACACCAAC
CAACCAGACAAAAAACAACAACTNCTAGACAATTAACAGATTTTCCCCAA
AAGAGGGGAAGAAAACGAACACACATTTTTCCCCCACAAAAAACAGGTCA
GCATATGAAATACTCCTATAATAGAGGAAATCCCACGCATATTCTCTAGT
TTTTTTTCGTTGAAGTGAATCATATTGTAACACCTAATATCTATCTGACT
CCGTCTCTATCCCATCCCTTTATTAGCGGTGGGGGCCCAATTCTTAAATT
TTAACATCCAAAACATAATCAATACCGACCCCCTAACCTTTCTCTTCCTC
CTGTAGCAAGCTCCGCCTCCTCCAGTACATCCTGCAAATAAACATTATCC
CAACACGATACCACGACATACGATCAAGACAAATAAAAAACCCGTCCATA
TTTTCTTATAAATCAGAAGCCTTAATACATGCTAGCCATGACGTTGGGGT
CAACACTCTGTGCTTTATTAGCCTCGCCCCTGACCTGCTAAGAGCTATAT
TGTCGGGCGGGGGGCAGACCGTAGGCATAGGAGGGTGCCCCAGAAATTCT
AAGCGAACTATGGCAAGATACGACGCAATACGGGAAAGCACGCCAACTAC
ACTACATAGATCACGAACACACTCCCACCCTGTTTAATTTGTGCCCTTAT
AAACCAAGATACATATCTTGAATCCTTATAGCAGACCGCATCAACCACAC
GAACTATAGAACAACTAACCGCCACCGCCGCATCAACTCACAAATTAACG
GCCCAGACGGTGGCTACATCTGTTGGCGTCATGCGGTCCTTATCTTTCGC
TGAGGTCAGTCCTGTCGACACCAAATAATGTTCTTATATGCTTGCTCTCC
CTCTTTTACCCCGCTGATACGCTGTATCAGATTATTACCGCGCAATGTAT
GCATACTACGACATCAGAGCCTACACCTGTCCCAATAAACATATCCCTAT
ATTTTTATATTCCCCCTAGCACCCGCCACTCATCGATTAGACCCGTAGAT
GGATGCGATTAGGCAGTGATAAACTACCCCACTCCCCTTATACCACGCCC
TATCCTACCCATTATCCCTTTGCGCGTATTCCGTCCGCCATTTCCGTATA
CACCCACTTGTATACAATCTCCGGCGGCCACATCGCGCTTACTACACGCG
TCGGCGCTGCAGACGTCGGAACTCAAGACCCTGCCAGCGTTTGACGACTA
TTATACCCGGATCCAGATGATGTTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_e13.b1 MSMg01no350_e13.b1 CHROMAT_FILE:
MSMg01no350_e13.b1 PHD_FILE: MSMg01no350_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:09 2005
         (485 letters)



>mm_chr1_109663993_109664877
          Length = 885

 Score =  853 bits (441), Expect = 0.0
 Identities = 473/487 (97%), Gaps = 10/487 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctctgcatttggataggatcatttattgcaagtttattcaagttgttccaggc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 gaattctctctgcatttggataggatcatttattgcaagtttattcaagttgttccaggc 764

                                                                       
Query: 65  tcataaccaacattatctttaaaa---aaaa-aaaaccaaaaaaccaaaa--aaaaaaaa 118
           ||||||||||||||||||||||||   |||| ||||| ||||||  ||||  ||||||||
Sbjct: 763 tcataaccaacattatctttaaaaaacaaaacaaaacaaaaaaa--aaaaacaaaaaaaa 706

                                                                       
Query: 119 aaccaaacaaacaaacaaaaaaccaaaacaatgactaatggctgagctttatatagaaag 178
           ||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 aa--aaacaaacaaaaaaaaaaccaaaacaatgactaatggctgagctttatatagaaag 648

                                                                       
Query: 179 aagacacacagggtaaaatggaagctgacaagcatcacaaaattgctgccaaagatgaag 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 647 aagacacacagggtaaaatggaagctgacaagcatcacaaaattgctgccagagatgaag 588

                                                                       
Query: 239 cactaaggataccgtggccaaggctgagaaaatttccacagaatcaccaaaccaagttgt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 cactaaggataccgtggccaaggctgagaaaatttccacagaatcaccaaaccaagttgt 528

                                                                       
Query: 299 gaataaaaataaaatcaaacgtggggaaaggtgaaggggaaagtgaagcagaaataaaga 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gaataaaaataaaatcaaacgtggggaaaggtgaaggggaaagtgaagcagaaataaaga 468

                                                                       
Query: 359 acctttgcattttcacatgacaaaaatctaattagagaagaaattgcaaccattagtcag 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 acctttgcattttcacatgacaaaaatctaattagagaagaaattgcaaccattagtcag 408

                                                                       
Query: 419 attgttgtgaactgtgaagcaacacagggcaacttgagaaagggctgtctgcagttcccc 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 attgttgtgaactgtgaagcaacacagggcaacttgagaaagggctgtctgcagttcccc 348

                  
Query: 479 cgagctg 485
            ||||||
Sbjct: 347 tgagctg 341


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)