BAC Information

Click to search

BAC

Clone NameMSMg01-350G19
Chromosome1 (Build37)
Map Location 161,680,875 - 161,681,410
singlet/doubletsinglet
Overlap geneTnr
Upstream genePappa2, 4930562F17Rik, EG240853, LOC664972, Rfwd2, EG620484
Downstream gene4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp, Rabgap1l, Gpr52
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350G19.T7 (MSMg01no350_g19.b1)MSMg01-350G19.TJ (MSMg01no350_g19.g1)
ACCAG462041AG462042
length7671,576
length of high quality
(start - end)
539 (51 - 589)---
definitionCHROMAT_FILE: MSMg01no350_g19.b1 PHD_FILE: MSMg01no350_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:20 2005CHROMAT_FILE: MSMg01no350_g19.g1 PHD_FILE: MSMg01no350_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGAGACC
GCGGAATTCTAGGAGCCACCCGTCCACATATACTCAGTATATATCTCAGT
AGATAGTCTTTTATAACCAAAAATTCAGTTAAGGGAGACTTAGCCCAGAA
CAGGTACATCTCCAGACAGCTAGGGAAAACATCACAACATCTTTACCCTT
ATGCTCTTTCACGAATATAAATGATCCCACAGCCAGCATGGGTAGGGTTC
TTCCCTGCATAGGGAAACCACTGTTAGCACTGACCCCATGGTGACCCTGG
GCTGCTTTTCTGGAGCCCAGGCTTCTCTTCAGCTCTGTATTTGGCGTTCA
CAGCACTCTGGTCGCCTGGCATTTGTCATGCTGTGCTTCATCAGAGAGTT
AATCAGGTTTGAGTTTTTAACAATGTGCTCGCTTGTCATGCTCACTTAAC
TTAAAATCAAGCCTGCTCGGGCATCAGTCGGTCCTGTTCACTCAGTCTGA
TAGTTTGGGCATCTAAAACTTTAGGATTTATCACCAAGGAATACTGTACA
TCTTGACCAAATACACTCTTGTCCATAAATCCTTTCATCTGGGTGAAGTA
GTTCAGGGTTAGAGACAATGCTGCCATCGAGAAAGGGTGTGCTTGGATTA
ACTCATCCTGATATCCTAACACCTGGCCCCCGATCTGGGGGGTGGGGGAA
AAAACACATTCTTTGGTCTGGGGAGTTGGAGAAACAAAACTTATATTGGG
GGCCCAAAGAAGGCGGG
TCTAACCTACAGTATATCCNCGAGCGCCCCGCGCGGCGGAAACANCCCAG
AGCCGTATAGCCAACTACAAGGNAAGAACAACCCACACAACGCGCGTAGC
CTTCTCGGGTAAGACCTTCTATCAGGTGTCGACAATCTTATCTTGGTTGG
TGCGATGTGCGGCGCGCAAGGTAGTTTTCGAAGACTATTATCACATATCA
ATAGCGGCTGCGNGATCCTACTTTTATTCATGTCTACTCTCGGCATTCCG
CTCGTATCCGGGGCAAAAATCATACATTTTCCTCGTACTATTTGTGTAAC
TCTCACCACGGTTATTTCTGACAAGCACCTTACCGAGTCCACCTAGGGAG
AGAAAGACATTACTCGTGTCACACTACGGTATCCAATAGAGAGACGATTG
GAGATAAAAGAAGTTACCGAGCGCGCAACATGGGTCGCATAAGCCGCCAC
CTCATATAGCACAATATTGTTTCCTATTCTTGATACATACACAAAAAACA
CGCTCACTTCTTTATTATTTCTTATCAACCCTAGTCTCTCTCTATTAAAC
AATAGCGCCGCTATACATATACGGTAGCGCGATCATTGACACCCTTCGGT
GTATACTAACGCGTCCATCTTCGCTCGCGTGAGATATATCTATGCAACCT
TCTGCCCCACNATGAGGAGCACATAACGATATTCTCGTCCTATGTGCGAG
CGCCGTAATAATTACCATATCCCGTCCTCTCTACTCCTCTTTGGCCGAGC
ATAGTAGGGTAGAAAACTCCGTGCCTCCACTACACCTATCATCTTTTATG
GAGNTATACACACTACTCGTCTCGACGCGTATTCTCTTTTCACCCCACCC
TTATATTATCCTCACACTATCCTCTCATAACACTTCGCGACCTACCCTCT
TCTTCCATCTCCTCTACTCATTCCATATTATATACGGCTATACCTCGACA
CATCGCGCTCTACCTTATCGAATGTTATTACGCTCTCCCGCCTGTCTCTT
CTTAATGCCTGTTTCTCGTCTATTGACTGCAGCCAAGACATCACCTATAG
ATCGCTCTGTGCTCCACCGCGCCGTATAATAATATAAAGATATAAGACGG
AATCTCCACCTACACAAAAACACTCACATAAAGATCCAAGAGATAGAGTA
CGTATCCTATGTCTCTCATCCCTTCTCGGACATCATCAAAGCAGATCATG
AGTATCACTCTCTCGACTCCTCTATCTATCTATATATATATATCCACTCT
GTCAACGAGCCCTCAGATATAGAATTCCGCCNTCGCAGTCGTCACAACTC
TCTGAGCATGTCCATAGCTCCTCCGCATCTATCACCTATATATATACCCC
TCACACACATCTCTGCTCTTATGTCGTATTCGCATAACTACACCGCACTA
CCACTGATTCTGTGTGTATCTTACNACATGTATATCTCGCCACATGTCGT
ATGTATATACACGCTCTCTATCGTGAGTTATCCGCACGCAGCTGCCGCAT
GCTATCTGCGCGCTCCCCTCTCCTCCTCCACTACTCGGCATATCATGATC
AGCGCTAGCACGATTATNANCATCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_g19.b1 MSMg01no350_g19.b1 CHROMAT_FILE:
MSMg01no350_g19.b1 PHD_FILE: MSMg01no350_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:20 2005
         (539 letters)



>mm_chr1_161680672_161681610
          Length = 939

 Score = 1006 bits (520), Expect = 0.0
 Identities = 532/536 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattctaggagccacccgtccacatatactcagtatatatctcagtagatagtctttta 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctaggagccacacgtccacatatactcagtatatatctcagtagatagtctttta 263

                                                                       
Query: 64  taaccaaaaattcagttaagggagacttagcccagaacaggtacatctccagacagctag 123
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taaccaaaaattgagttaagggagacttagcccagaacaggtacatctccagacagctag 323

                                                                       
Query: 124 ggaaaacatcacaacatctttacccttatgctctttcacgaatataaatgatcccacagc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggaaaacatcacaacatctttacccttatgctctttcacgaatataaatgatcccacagc 383

                                                                       
Query: 184 cagcatgggtagggttcttccctgcatagggaaaccactgttagcactgaccccatggtg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cagcatgggtagggttcttccctgcatagggaaaccactgttagcactgaccccatggtg 443

                                                                       
Query: 244 accctgggctgcttttctggagcccaggcttctcttcagctctgtatttggcgttcacag 303
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 444 accctgggctgcttttctggagcccaggcttctccccagctctgtatttggcgttcacag 503

                                                                       
Query: 304 cactctggtcgcctggcatttgtcatgctgtgcttcatcagagagttaatcaggtttgag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cactctggtcgcctggcatttgtcatgctgtgcttcatcagagagttaatcaggtttgag 563

                                                                       
Query: 364 tttttaacaatgtgctcgcttgtcatgctcacttaacttaaaatcaagcctgctcgggca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tttttaacaatgtgctcgcttgtcatgctcacttaacttaaaatcaagcctgctcgggca 623

                                                                       
Query: 424 tcagtcggtcctgttcactcagtctgatagtttgggcatctaaaactttaggatttatca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tcagtcggtcctgttcactcagtctgatagtttgggcatctaaaactttaggatttatca 683

                                                                   
Query: 484 ccaaggaatactgtacatcttgaccaaatacactcttgtccataaatcctttcatc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ccaaggaatactgtacatcttgaccaaatacactcttgtccataaatcctttcatc 739


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)