Query= MSMg01no350_n05.b1 MSMg01no350_n05.b1 CHROMAT_FILE:
MSMg01no350_n05.b1 PHD_FILE: MSMg01no350_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:53 2005
(369 letters)
>mm_chr1_62556271_62557039
Length = 769
Score = 642 bits (332), Expect = 0.0
Identities = 344/348 (98%)
Strand = Plus / Plus
Query: 22 ctgttgcgacttttcaatcccaggaccgatgtgtatcagccatcaggagggagaattgat 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ctgttgcgacttttcaatcccaggaccgatgtgtatcagccatcaggagggagaattgat 281
Query: 82 ccttgtagtctgacatttgacaagcttcgaattgtgtcctcgttcacctcctttaattca 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ccttgtagtctgacatttgacaagcttcgaattgtgtcctcgttcacctcctttaattca 341
Query: 142 aacactgtaaacggtactcagctttgtctttataggtcaatccatgtcagagtttgttgt 201
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 aacaccgtaaacggtactcagctttgtctttataggtcaatccatgtcagagtttgttgt 401
Query: 202 caaagtgagttccaaatattaggaaccacaagaaaatctcaggtttgtccatgactccat 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 caaagtgagttccaaatattaggaaccacaagaaaatctcaggtttgtccatgactccat 461
Query: 262 ggtcagactactggtctatctatttccagttttctgtgagcagagctgctctttttatat 321
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 462 ggtcagactactggtctacctatttctagttttctgtgagcagagctgctctttttatac 521
Query: 322 tgatatttccatctctttttaagttactgtatgcatgtttttaagtta 369
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgatatttccatctctttttaagttactgtatgcatgtttttaagtta 569
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space: 273600
Effective search space used: 273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no350_n05.g1 MSMg01no350_n05.g1 CHROMAT_FILE:
MSMg01no350_n05.g1 PHD_FILE: MSMg01no350_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:53 2005
(450 letters)
>mm_chr1_62746634_62747486
Length = 853
Score = 841 bits (435), Expect = 0.0
Identities = 448/453 (98%), Gaps = 3/453 (0%)
Strand = Plus / Minus
Query: 1 cataatctgagatgacttctgggtatctgtactttttcctacacatgttttagatga-tt 59
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 653 cataatctgagatgacttctgggtatctgtactttttcctacacatgttttagatgattt 594
Query: 60 ttgactcataggccaattgaacaataattctgatatatgctatttactgtacagcctttg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 ttgactcataggccaattgaacaataattctgatatatgctatttactgtacagcctttg 534
Query: 120 gtgcatctcctattgaaggatatttggaaaagtactccctttactctttctctgtgaaca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gtgcatctcctattgaaggatatttggaaaagtactccctttactctttctctgtgaaca 474
Query: 180 ctttttttt--gggggggggtctgatgtttcagattccgggagagcctcaccaagaatat 237
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ctttttttttggggggggggtctgatgtttcagattccgggagagcctcaccaagaatat 414
Query: 238 atccacaaaagtgccagaatggtgcagctcctggctttaccgtgtgactttgagaagcgg 297
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 413 atccacaaaagtgccagaatggtgcagctcctggctttactgtgtgactttgagaagcgg 354
Query: 298 tgggcctaagaacctatttggaaaccacctcaaagatgatctggggtagcaaggagagtt 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tgggcctaagaacctatttggaaaccacctcaaagatgatctggggtagcaaggagagtt 294
Query: 358 ggagcaacatggtcagagggtcagttattggagtttgtggagctggattcagcccccccc 417
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ggagcaacatggtcagagggccagttattggagtttgtggagctggattcagcccccccc 234
Query: 418 ccccagcccccatacaagcatcactggttgctg 450
|||||||||||||||||||||||||||||||||
Sbjct: 233 ccccagcccccatacaagcatcactggttgctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 853
Length adjustment: 10
Effective length of query: 440
Effective length of database: 843
Effective search space: 370920
Effective search space used: 370920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
