Query= MSMg01no350_n21.b1 MSMg01no350_n21.b1 CHROMAT_FILE:
MSMg01no350_n21.b1 PHD_FILE: MSMg01no350_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:57 2005
(518 letters)
>mm_chr1_179054615_179055533
Length = 919
Score = 965 bits (499), Expect = 0.0
Identities = 511/515 (99%), Gaps = 1/515 (0%)
Strand = Plus / Minus
Query: 5 gaattcttagattatt-cacttcaaagagggaaaaattcttctatggaagagtgaataac 63
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 gaattcttagattattaaacttcaaagagggaaaaattcttctatggaagagtgaataac 660
Query: 64 tgcccagatgtctttaggttcatcctgtgtttgcaaggtccctgcttattctgtatggtg 123
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 659 tgcccagatgtctttaggttcatcctgtgtttgcaaggtccctacttattctgtatggtg 600
Query: 124 agaagcagggtatgccagcacctgtctcaagaaactcctcctacaagtctgccttatgtg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 agaagcagggtatgccagcacctgtctcaagaaactcctcctacaagtctgccttatgtg 540
Query: 184 ctgcaaatattggtctatcctgaaattgtctcttttccaaaacttttctttattctcttt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ctgcaaatattggtctatcctgaaattgtctcttttccaaaacttttctttattctcttt 480
Query: 244 tataaatgataggatttctacactcctagctgcccctcttttaaatgaatgtttcctatc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tataaatgataggatttctacactcctagctgcccctcttttaaatgaatgtttcctatc 420
Query: 304 taacctattttttactcacattgaaaatagaaaattatggttcttaaaaccacccaaatg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 taacctattttttactcacattgaaaatagaaaattatggttcttaaaaccacccaaatg 360
Query: 364 atctttatggctgaagttagagtcagatttcagatttggagacaaacaagttcatgggtt 423
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 359 atctttatggctgaagttagagtcagatttcagatttggagacaaataagttcatgggtt 300
Query: 424 aaatcaaaacatatggagagagaaatttagatttagcatttatcttatatatctagaagg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 aaatcaaaacatatggagagagaaatttagatttagcatttatcttatatatctagaagg 240
Query: 484 gtcattaactgtctagatagatatgaattatgaaa 518
|||||||||||||||||||||||||||||||||||
Sbjct: 239 gtcattaactgtctagatagatatgaattatgaaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 919
Length adjustment: 10
Effective length of query: 508
Effective length of database: 909
Effective search space: 461772
Effective search space used: 461772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no350_n21.g1 MSMg01no350_n21.g1 CHROMAT_FILE:
MSMg01no350_n21.g1 PHD_FILE: MSMg01no350_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:57 2005
(431 letters)
>mm_chr1_178935485_178936312
Length = 828
Score = 729 bits (377), Expect = 0.0
Identities = 418/441 (94%), Gaps = 18/441 (4%)
Strand = Plus / Plus
Query: 1 ctagagatgccttggaagaaagcctgagcgaactgcagcgacacagcatggtcagttgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ctagagatgccttggaagaaagcctgagcgaactgcagcgacacagcatggtcagttgtt 255
Query: 61 gtcctgaaatagtcgtcctacacatgcaagtcccaaaggtcctctcgtgccctaggtggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gtcctgaaatagtcgtcctacacatgcaagtcccaaaggtcctctcgtgccctaggtggc 315
Query: 121 acaccagcccctgcctggtgaaaagaagagtcctgctgagcacacgcctttaatcccagc 180
|||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||
Sbjct: 316 acaccagcccctgcctggtgaaaagaagagtcctgccgagcacgcacctttaatcccagc 375
Query: 181 acttgggaggcagaggcaagcggatttctgattttgaggccagcctggtctacagagtga 240
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 376 acttgggaggcagaggcaggtggatttctgattttgaggccagcctggtctacagagtga 435
Query: 241 gttccaggacagccaggggctacacagagaaaccctgtctcgaaaaaccnnnnaaaaaaa 300
|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 436 gttccaggacagccaggg-ctacacagagaaaccctgtctcgaaaaacc----aaaaaaa 490
Query: 301 aaaaaaaaaaaa----------gaaaaagtgtccttttctcatggaccagccattcattg 350
|||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aaaaaaaaaaaaaagaaagaaagaaaaagtgtccttttctcatggaccagccattcattg 550
Query: 351 tgaggacagaaggtgcttcacgggacaaggacaggagtcagccacagttcccaaggtgtc 410
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tgaggacaga---tgcttcacgggacaaggacaggagtcagccacagttcccaaggtgtc 607
Query: 411 acaaggtccacacattgctag 431
|||||||||||||||||||||
Sbjct: 608 acaaggtccacacattgctag 628
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 828
Length adjustment: 9
Effective length of query: 422
Effective length of database: 819
Effective search space: 345618
Effective search space used: 345618
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
