NTATTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCATCTGCTAACAACTTTTTTCCAGAGGTGAGGCGGCATATTC
TTGGAACTAACAGCAGCAGCGTCTTCGAGGGTGCCAGGGTTCTGCCCATT
AGAAAGATAGTTATTAGTGTTTGCAGTAGACATTGCCGCTTCTCTGCTGT
AGTGTAGTCTGTGGTGCTGGAGTTGAGTGCAGCCTAGCACAGGGAGGCAG
TTGCTTCTGCACTGGGTCTGCCGACTCCAGTCCTAAGGGTCTTCTCTCTG
TACCCCAGTCTCAGCTAATTAATATCTTGTCAGCTGGACAATGCCGCTGA
TTGATTAGACTATTCATGTTTGGATTGTTGAACTAGAACTGTGTATGGAA
TCTGAGGGGCAAAAATCTTCCCCCCGCCTAATAATCAATGGAATTAACAC
CTTGTTAAGATTAAGGGTGTCATCTACTCTCCCAAAAAGAAAAAGTCATT
TTTATGGTACATTTTGAACGTCCAGTGTTCTTAATTTAATTAGCTAAACT
CTTCCGATCATTTCTTCATTTTTTCTACTCGTTATTAGATATATGTCTAC
TCCCCATCTTTTGTATATTGAGTCTTGACTTTTGTTCTCCTTCCCCTTGT
ATCATCTGATTCTTGTTCTTTTTCGGTTTCCCCCTATATTCCCCTCCTTT
CTCCCTTTTCTTCTCTCTTTTTCCCTATCTCCTTTAACTTTACCTTCTAT
ACTTCCTTTACCTTATACCCCCCG

NNNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGATGGTTGATGAACAA
CAAGGGAAAAGGGATAATGTTAATTAGGTACCCCTGTTCGGGTGCCACCT
TAGAGCTGTATTTAGGTCCCAGAAGGCTTCATGTTTATTTTCCTAGGCTA
GAGGTCCAGGAACCTAGGACATAATTCATGGAAAGAGGATTTGATGCGAG
AAAGGTTAGTACCAACTTTCTGTGACATAGCACACCACCCTCGGAATGTT
CAAAGTCACTTTGTCAATCTGGGGACATTTTGGATGCTTCCCCTTTTAAC
ACCATAAGATTTGTCTTCATGTGGCACAGAATGTCACAAGCACAGGGGCT
TTTGTTGTTGTTGCAGATGACTATAATTCCTCTTTGAAGGTTTTATGTCT
CTCCCAAGCTTAGGTCTTTAATAAATATGCAAAATCACTCTTAAACCTTT
ATTCATTTTTTTTACATAGCTAAACTTCATCTATCCTTATTAGAATAGAC
TCATGAGTAATCCCAACCCCTTAAGTTCCCAATTAAGAACCGGTTATAAT
TACCTAGTCGAGAGGAATTTTATTAATTGCTTACAGCACTTCCCGGGCTT
GGTTCTTTCGTCCTGTTCTTCTTTCCATTAATGTACTCATTTTCTTGTTC
TTCCCTGAACCTTTATGTGATTTTAAGTCCCTTCGTCTCAGGCTAGTGCA
G

Query= MSMg01no350_o17.b1 MSMg01no350_o17.b1 CHROMAT_FILE:
MSMg01no350_o17.b1 PHD_FILE: MSMg01no350_o17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:01 2005
         (342 letters)



>mm_chr1_38393204_38393945
          Length = 742

 Score =  623 bits (322), Expect = 0.0
 Identities = 337/342 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttttccagaggtgaggcggcatattcttggaactaacagcagcagcgtcttcgagggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ttttttccagaggtgaggcggcatattcttggaactaacagcagcagcgtcttcgagggt 483

                                                                       
Query: 61  gccagggttctgcccattagaaagatagttattagtgtttgcagtagacattgccgcttc 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gccagggttctgcccattacaaagatagttattagtgtttgcagtagacattgccgcttc 423

                                                                       
Query: 121 tctgctgtagtgtagtctgtggtgctggagttgagtgcagcctagcacagggaggcagtt 180
           |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 422 tctgctgtagtgtagtctgtggtgctggaggtgagtgcagcctagcacggggaggcagtt 363

                                                                       
Query: 181 gcttctgcactgggtctgccgactccagtcctaagggtcttctctctgtaccccagtctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gcttctgcactgggtctgccgactccagtcctaagggtcttctctctgtaccccagtctc 303

                                                                       
Query: 241 agctaattaatatcttgtcagctggacaatgccgctgattgattagactattcatgtttg 300
           ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 agctagttaatatcttgacagctggacaatgccgctgattgattagactattcatgtttg 243

                                                     
Query: 301 gattgttgaactagaactgtgtatggaatctgaggggcaaaa 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gattgttgaactagaactgtgtatggaatctgaggggcaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no350_o17.g1 MSMg01no350_o17.g1 CHROMAT_FILE:
MSMg01no350_o17.g1 PHD_FILE: MSMg01no350_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:01 2005
         (426 letters)



>mm_chr1_38208002_38208827
          Length = 826

 Score =  762 bits (394), Expect = 0.0
 Identities = 418/426 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatggttgatgaacaacaagggaaaagggataatgttaattaggtacccctgttcgggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatggttgatgaacaacaagggaaaagggataatgttaattaggtacccctgttcgggt 260

                                                                       
Query: 61  gccaccttagagctgtatttaggtcccagaaggcttcatgtttattttcctaggctagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccaccttagagctgtatttaggtcccagaaggcttcatgtttattttcctaggctagag 320

                                                                       
Query: 121 gtccaggaacctaggacataattcatggaaagaggatttgatgcgagaaaggttagtacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 gtccaggaacctaggacataattcatggaaagaggatttgatgcgagaaagtttagtacc 380

                                                                       
Query: 181 aactttctgtgacatagcacaccaccctcggaatgttcaaagtcactttgtcaatctggg 240
           || ||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct: 381 aagtttctgtgacatagcgcaccaccctcggaatgttcaaagccattttgtcaatctggg 440

                                                                       
Query: 241 gacattttggatgcttccccttttaacaccataagatttgtcttcatgtggcacagaatg 300
           |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 441 gacattttggatgcttccccttttaacaccatgagatttgtcttcgtgtggcacagaatg 500

                                                                       
Query: 301 tcacaagcacaggggcttttgttgttgttgcagatgactataattcctctttgaaggttt 360
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcacaagcacgggggcttttgttgttgttgcagatgactataattcctctttgaaggttt 560

                                                                       
Query: 361 tatgtctctcccaagcttaggtctttaataaatatgcaaaatcactcttaaacctttatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatgtctctcccaagcttaggtctttaataaatatgcaaaatcactcttaaacctttatt 620

                 
Query: 421 catttt 426
           ||||||
Sbjct: 621 catttt 626


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)