CTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACACTTTGAGAAACAAGATCTATGAGAACAGAATTTAACATTTG
AATACATAGCAACACCAGACCAACCCCAACATCCCTTTAATTATTTTCCT
ATTATTTTAATGTACATGTTGCTGCAAGTCAGATGCATCTTATTTAATAA
GCAATACAAGTATTGGAAAAAGTTATGTTTTTATAAGCCATGATATGTAT
ATTTTCCATTTGGAAAAATCTTTCCAATGCTTCATTTTATTTTTCAGAAT
TTCACTCTATTAAGTATAGTTATACATCTTTTGAGGGTGTTATGATTCAG
AACTTTCAATGCACTTTCATAATCTAACTACCAGTCTCTTTTCTCTTTCA
ACTTGTAAAATATCTATGTTAGCATTTCTCATTACATTCTTATCTCTTGC
ATGTTTCTCTCATATATCATGTTGGGATATTTTTGTAATGTTTTATGAGA
ATGAGAAGATGAATGCCTTTTGATTATTTCATGTACATGTATAANATACA
GGATCTATAAATATATGGGATTTTTCTGGCCTTGGATTATATGGTGCTAG
AAAATGTAGAAGCATAAAGTAATGATAGATGCATATAGAAGTGTGAAACA
GGATCCCTATCCATTACCCTGTATAANNAAATAAGTAAAAATAGATCAAT
AACCTTAATATAAGATGTAAGACTCTGAGATTCTTAGTGGAAATTGCT

NNNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTGTGACAAGCCATAG
TGGGGATAAAAAGACCCTTGTCTACAAATTTGAGCCTCAGACGTCCTAGG
TAAGGAAGTAATTTTCCCTTATTTCTATTGCTGCAGCAAAACACCACTAG
CAAAGTATCTAATAGAAGTAAGTGGAAGTTATTACTTCAGAGGGTCAGAG
TACATGATAACAGAGCAAAGAGTAGATAACAGGAAGAGTTGAGCACACAT
AACTTGATTTGCTAGTTGGAGGCAGAGAGTGCTAATTTGGAATTGTGTAT
GTCTTTTGAATCCACAAAACCCAGTGACATACCTTATCCAACAAGGATAC
ATCCTCTAAAATTTCTCACATATTTTCACTGACTAGGAACCAAATATTCA
AAGACTTAAGCCTACAGAGATCATTCTGACTCAAACCTCCATATTCTGGT
TCCCAGCCTAAAATAGTAGTTCTTAACAATAGAGAATGGAGGCCACAGCA
GCAGGAAAGAGGAACTTGCCAGCAGGAGTGAGAAAAAATAGAAGAAAGAA
AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAATGTTCTTCTT
CCATGTCCTTCTATGTAGGCTGTCACAAAACAATCTGTTCAAACAATTAA
G

Query= MSMg01no351_a04.b1 MSMg01no351_a04.b1 CHROMAT_FILE:
MSMg01no351_a04.b1 PHD_FILE: MSMg01no351_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:09 2005
         (596 letters)



>mm_chr1_102477212_102478207
          Length = 996

 Score = 1019 bits (527), Expect = 0.0
 Identities = 581/610 (95%), Gaps = 19/610 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacactttgagaaacaagatctatgagaacagaatttaacatttgaatacatagc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 gaattcacactttgagaaacaagatctatgagaacagaatttaacatttgaatacatagc 247

                                                                       
Query: 65  aacaccagaccaaccccaacatccctttaattattttcctattattttaatgtacatgtt 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 248 aacaccagaccaaccccaacatccctttaattattttcctattattttaatgtaaatgtt 307

                                                                       
Query: 125 gctgcaagtcagatgcatcttatttaataagcaatacaagtattggaaaaagttatgttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 308 gctgcaagtcagatgcatcttatttaataagcaatacaagtattggaaagagttatgttt 367

                                                                       
Query: 185 ttataagccatgatatgtatattttccatttggaaaaatctttccaatgcttcattttat 244
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 368 ttataagccatgatatgtatattttccatttggaaaaacctttccaatgcttcattttat 427

                                                                       
Query: 245 ttttcagaatttcactctattaagtatagttatacatcttttgagggtgttatgattcag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ttttcagaatttcactctattaagtatagttatacatcttttgagggtgttatgattcag 487

                                                                       
Query: 305 aactttcaatgcactttcataatctaactaccagtctcttttctctttcaacttgtaaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactttcaatgcactttcataatctaactaccagtctcttttctctttcaacttgtaaaa 547

                                                                       
Query: 365 tatctatgtt--------agcatt----------tctcattacattcttatctcttgcat 406
           ||||||| ||        | ||||          ||||||||||||||||||||||||||
Sbjct: 548 tatctattttttctcatta-cattctcattacattctcattacattcttatctcttgcat 606

                                                                       
Query: 407 gtttctctcatatatcatgttgggatatttttgtaatgttttatgagaatgagaagatga 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 607 gtttctctcatatatcatgttgggatatttttgtaatgttttatgagaatgtgaagatga 666

                                                                       
Query: 467 atgccttttgattatttcatgtacatgtataanatacaggatctataaatatatgggatt 526
           ||||||||||||||||| ||||| |||||||| |||||||||| ||||||||||||||||
Sbjct: 667 atgccttttgattatttgatgtatatgtataaaatacaggatccataaatatatgggatt 726

                                                                       
Query: 527 tttctggccttggattatatggtgctagaaaatgtagaagcataaagtaatgatagatgc 586
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 tttctggccttggattttatggtgctagaaaatgtagaagcataaagtaatgatagatgc 786

                     
Query: 587 atatagaagt 596
           ||||||||||
Sbjct: 787 atatagaagt 796


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)