Query= MSMg01no351_j17.b1 MSMg01no351_j17.b1 CHROMAT_FILE:
MSMg01no351_j17.b1 PHD_FILE: MSMg01no351_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:54 2005
(468 letters)
>mm_chr1_40903763_40904627
Length = 865
Score = 714 bits (369), Expect = 0.0
Identities = 390/397 (98%), Gaps = 3/397 (0%)
Strand = Plus / Minus
Query: 72 tttttttgtttgtttgtttgcaacagggtttttgcagacatgcaaactgtcttcatacaa 131
||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 ttttttt-ttt-ttt-tttgcaacagggtttttgcagacatgcaaactgtcttcatacaa 609
Query: 132 acatttagtaacttagctcatacctcatgttaaactctggtattttggtgtgttttctaa 191
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 608 acatttagtaacttagctcacacctcatgttaaactctggtattttggtgtgttttctaa 549
Query: 192 tttggtgtgctttctttttctcagtcttttaaagtgtgaatagatgagttttgaaaaaaa 251
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 548 tttggtgtgctttctttttctcagtcttttaaagtgtgaatagatgagttttgggaaaaa 489
Query: 252 aaagaaacataaatatcaggaagccacaatatatttatcacttgtggaaatctgccaagc 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aaagaaacataaatatcaggaagccacaatatatttatcacttgtggaaatctgccaagc 429
Query: 312 cttttcagtatcccagttcccctctaccaagtctgtctcactgtgagttagactttagaa 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cttttcagtatcccagttcccctctaccaagtctgtctcactgtgagttagactttagaa 369
Query: 372 gaccttgcaattgaaggcactatagcccatgggttcccctggcatccctccccaggcaaa 431
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 368 gaccttgcaattgaaggcactataacccatgggttcccctggcatccctccccaggcaaa 309
Query: 432 tacaactcctgccacccccagccccacccccatagtt 468
|||||||||||||||||||||||||||||||||||||
Sbjct: 308 tacaactcctgccacccccagccccacccccatagtt 272
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 865
Length adjustment: 10
Effective length of query: 458
Effective length of database: 855
Effective search space: 391590
Effective search space used: 391590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no351_j17.g1 MSMg01no351_j17.g1 CHROMAT_FILE:
MSMg01no351_j17.g1 PHD_FILE: MSMg01no351_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:54 2005
(450 letters)
>mm_chr1_40721806_40722656
Length = 851
Score = 766 bits (396), Expect = 0.0
Identities = 438/452 (96%), Gaps = 3/452 (0%)
Strand = Plus / Plus
Query: 1 agacgctcctgctgggatagagagaaggtatgtggggatacgtgcttaatcttgtgtggc 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 agacgctcctgctgggatagagagaaggtgtgtggggatacgtgcttaatcttgtgtggc 260
Query: 61 ttcaggtcttattcctttttggaaggatctgcagccttggaaagcggtgaatgctcaagg 120
||||||||||||||||||||||||||||||||| | |||| ||||||||||||||| |||
Sbjct: 261 ttcaggtcttattcctttttggaaggatctgcaacattgggaagcggtgaatgctc-agg 319
Query: 121 -aaaacaatacaactgagacaggaaggaacccaagtggctctcttgatagtcctgtgggc 179
||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 320 caaaacgatacaactgagacaggaaggaacccaagtggctctcttgatagtcctgggggc 379
Query: 180 tcaggggagcaggagcccttcccagtctccactgctgtgctccagg-accttcttagtca 238
||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 380 tcaggagagcaggagcccttcccagtctccactgctgtgctccaggcaccttctaagtca 439
Query: 239 tctgcagcacctcgcattctgctgggacaaagacgccccgtcgcccagcgtcctgctggg 298
||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 440 tctgcagcacctcacattctgctggaacaaagacgccccgtagcccagcgtcctgctggg 499
Query: 299 cagagaaggatctgagaacaaggtattcatgttgctccaagccaacattctactccctga 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cagagaaggatctgagaacaaggtattcatgttgctccaagccaacattctactccctga 559
Query: 359 tcaaaacgaaacagtcagattttagctacttctgatgctttgcaaaagtcatcagctctg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tcaaaacgaaacagtcagattttagctacttctgatgctttgcaaaagtcatcagctctg 619
Query: 419 cagtgggtgtgggggagctttgctcgctctgt 450
||||||||||||||||||||||||||||||||
Sbjct: 620 cagtgggtgtgggggagctttgctcgctctgt 651
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 851
Length adjustment: 10
Effective length of query: 440
Effective length of database: 841
Effective search space: 370040
Effective search space used: 370040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
