Query= MSMg01no351_j20.b1 MSMg01no351_j20.b1 CHROMAT_FILE:
MSMg01no351_j20.b1 PHD_FILE: MSMg01no351_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:54 2005
(523 letters)
>mm_chr1_187767070_187767992
Length = 923
Score = 934 bits (483), Expect = 0.0
Identities = 514/533 (96%), Gaps = 15/533 (2%)
Strand = Plus / Plus
Query: 5 gaattcagcctttgtttaaatgatgcacatagtaaagacatagacatgtgattagttcag 64
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 192 gaattcagcctttgtttaaatgatgcacatagtaaagacgtagacatgtgattagttcag 251
Query: 65 gtctgcttttacttcacaggattaaaaggtttttttcctgaaggtcacagaacatttgat 124
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 252 gtctgcttttacttcacaggattaaaagctttttttcctgaaggtcacagaacatttgat 311
Query: 125 agtggcctcttcaattgccctacctcattttttttccttgtggagagatgtctccaccaa 184
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 312 agtggcctcttcaattgccctacctcattttttt-ccttgtggagagatgtctccaccaa 370
Query: 185 tatgttttttgtggtttttt--------------gttgttgtttggtttttgctttgttt 230
|||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 371 tatgttttttgtggttttttttgttgttgttgttgttgttgtttggtttttgctttgttt 430
Query: 231 ttttggttgctttttgtttttccttgaaatgcatccctctcccatgagactgagaaacca 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ttttggttgctttttgtttttccttgaaatgcatccctctcccatgagactgagaaacca 490
Query: 291 atgacttattaatgcccaggcaggcatccaagtggacacaatgataactatttgcttcat 350
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 491 atgacttattaatgcccaggcaggcatccaagtggacacaacgataactatttgcttcat 550
Query: 351 cataggtcagagatgtccttctgactaacaagacatggaggatagatttgggatgaggac 410
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 551 cataggtcagagatgtccttctgactgacaagacatggaggatagatttgggatgaggac 610
Query: 411 cacaaaaggcttcatttactgttaaatcacacattcagcatggcagcagggatgacctat 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 cacaaaaggcttcatttactgttaaatcacacattcagcatggcagcagggatgacctat 670
Query: 471 gagtttctgcacacggcaatagttatatgtgggctaaagccagagcattgagg 523
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gagtttctgcacacggcaatagttatatgtgggctaaagccagagcattgagg 723
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space: 468369
Effective search space used: 468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no351_j20.g1 MSMg01no351_j20.g1 CHROMAT_FILE:
MSMg01no351_j20.g1 PHD_FILE: MSMg01no351_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:54 2005
(472 letters)
>mm_chr1_187881200_187882071
Length = 872
Score = 890 bits (460), Expect = 0.0
Identities = 469/472 (99%)
Strand = Plus / Minus
Query: 1 caagtagcaattccagtgtttcccatcgggttcttcaccactgatggttgttggccatgg 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 672 caagtagcaattccagtgtttcccatcgggttcttcaccactgatgattgttggccacgg 613
Query: 61 aagtatagaatgaagagaaggataatattttcacacaccagcatggaggctttcaccgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 aagtatagaatgaagagaaggataatattttcacacaccagcatggaggctttcaccgag 553
Query: 121 cgttgccattatctcaaacaaagggagtctaaaactctcagtcctctgtcgtgaacatgt 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 552 cgttgccattatctcaaacaaagggagtctaaaactctcagtcctctgttgtgaacatgt 493
Query: 181 ctgcctttaattctctttctgtgactttatcctctttcctcttcattatctgtaacatga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ctgcctttaattctctttctgtgactttatcctctttcctcttcattatctgtaacatga 433
Query: 241 agtcattttggtctctctcctttgtcccacttctactttataattcattcaatcggtcta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 agtcattttggtctctctcctttgtcccacttctactttataattcattcaatcggtcta 373
Query: 301 ttaatttcaactctgtagacttccttttgtaaatacctatggaaaacttaaatgtaaaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ttaatttcaactctgtagacttccttttgtaaatacctatggaaaacttaaatgtaaaca 313
Query: 361 ctcatttttctttaagctggtgtggtggctcacacaggaggcagaggcagaggcagaagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ctcatttttctttaagctggtgtggtggctcacacaggaggcagaggcagaggcagaagg 253
Query: 421 aatcataaatttgagaaaagttggattatggagtaagacccacctttaagat 472
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aatcataaatttgagaaaagttggattatggagtaagacccacctttaagat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
