Query= MSMg01no351_j24.b1 MSMg01no351_j24.b1 CHROMAT_FILE:
MSMg01no351_j24.b1 PHD_FILE: MSMg01no351_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:55 2005
(236 letters)
>mm_chr12_84080655_84081290
Length = 636
Score = 402 bits (208), Expect = e-117
Identities = 229/236 (97%), Gaps = 2/236 (0%)
Strand = Plus / Minus
Query: 2 gtcccagttcaaggcctgaagtaaatcttgggatttaatcttctagctatagcaatgcta 61
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 436 gtcccagttcaaggcctgaagtgaatcttgggatttcatcttctagctatagcaatgcta 377
Query: 62 gttaacagttttgagggaaactgatgtttgaatcaccgttccagtgatgacaatagtagc 121
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 376 gttaacagttttgaggaaaactgatgtttgaatcaccgtgccagtgatgacaatagtagc 317
Query: 122 ggcctgcaagctg-tcatggcagctgacattgctatggtgcctcatttcagggagaaact 180
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ggcctgcaagctgct-gtggcagctgacattgctatggtgcctcatttcagggagaaact 258
Query: 181 tcatatctctgttaactgtggaacaaactggggagagtccacatttgtttccttcc 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tcatatctctgttaactgtggaacaaactggggagagtccacatttgtttccttcc 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space: 142329
Effective search space used: 142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no351_j24.g1 MSMg01no351_j24.g1 CHROMAT_FILE:
MSMg01no351_j24.g1 PHD_FILE: MSMg01no351_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:55 2005
(423 letters)
>mm_chr1_6269800_6270622
Length = 823
Score = 810 bits (419), Expect = 0.0
Identities = 422/423 (99%)
Strand = Plus / Minus
Query: 1 gctctccagctctactggaattggatgatgacggttctaaggcagttaaggagaattaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gctctccagctctactggaattggatgatgacggttctaaggcagttaaggagaattaca 564
Query: 61 acatcatttcggaatcagattcccagaagcctttttttaaaaggtgccacaaaaccagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 acatcatttcggaatcagattcccagaagcctttttttaaaaggtgccacaaaaccagag 504
Query: 121 ttcagaaataacccccaacattcataaaacaaaacaaaaagactgtcaagggctatggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ttcagaaataacccccaacattcataaaacaaaacaaaaagactgtcaagggctatggaa 444
Query: 181 tccaccagaaactcctaaaatggtaaaaatgaaagttgaacgcaacttcaaagattaaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tccaccagaaactcctaaaatggtaaaaatgaaagttgaacgcaacttcaaagattaaca 384
Query: 241 gcacactgacataaagtggtgatgtgtgtaaaatggttaagcagtgttgccatggggtgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gcacactgacataaagtggtgatgtgtgtaaaatggttaagcagtgttgccatggggtgc 324
Query: 301 aaggtatgtatagcaaggcagtcctggctgcattctaacaggacacatgcgtgcaactgc 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaggtatgtatagcaaggcagccctggctgcattctaacaggacacatgcgtgcaactgc 264
Query: 361 ttagattggaagctaagtgagggaggaacctgagttgatcttaagggctgctactctttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttagattggaagctaagtgagggaggaacctgagttgatcttaagggctgctactctttt 204
Query: 421 ctt 423
|||
Sbjct: 203 ctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space: 336996
Effective search space used: 336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
