NNNNNTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATTGTCCTGATGTCACATTGATAAACAACTCCTTGTGTC
ACTAGACTTGTAACGATGCTAGCTCGGTGTTTAAGTTAAGAGGTCATCCC
ATGCAATGGGAAAGATTTTCTTTTCTTTTGCGTAGTACAGATGCATCATC
ACCACCAAGACTCTCTGAATATCCATGTGTGCTTAATAAAATCAATACAG
CCAAAATTGAGAAGTGGTTTATTCTAGCTATTCCATGTCCTCATATATTT
GTTCTTCTGTTCCCACTTAACTGAGGACCATTATTTTCTTCCAAACTCTT
TTTTTTTCTGCGTTAAGAACTTCAAACCTGTAGGTTCTATCAAATTGGAT
AATATTAGCTGAGATTGTGGATTGGTCTCAGCTGACTCATAAGAACCTAA
TTTTGCACTTTGGTGGTACCAAGTCCTACCAGCATTTGGCTGATTATATA
ACTTATCAGTCTCATAGTCTTTCTGTTGTGTTGGCAATCCTATGAGCTTC
CTATTGTAATTATGATAAACATGTATGNTGTACTGTGTATGGCTATCATT
ATGACCTCATTTTTGCAACAAAGTAATGAAAATAACTTGAATTAAATACC
TTCTTTCAAGTTACAAAAACAAATCTCCAATTGTACTCCCCTTCTTATGG
GAAGCCTTCTTTGCTTTTGTTTACAAAGGAGAAGTCCACCCCCG

NTTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTATACTGGGGTATA
GAACCTTCACAGGACTTAGGGCCTCTCCTCTCATTAATGACCAACTAGAC
CATCCTCTGCTACAAATGCAGGTAGAGACACAAGTCCCACCATGTGTTTC
CTTTGATTAGTGGTTTAGTCCCAAGGAGCTCTGGGGGATACTGGTTAGTT
CATATTGATGTTCCTTCTATGGGGCTGCAAACTCCTTCAGCAACTTGGGT
ACTTTCTCTAGCCCCTTGAATGGGGACCCTGTGCTCCGTCCAATGGATGG
CTTCTGATAAGTCTGCCTTTATCTGTTACTTGACCTTTTTCTCTTACTTC
TTTTTATATTCTCTATTTTGTGCATTTGGTGTTTTGACTTTTATGTGATG
GGAGGAATTTCTTTTCTAGTCCAATCTATTTGGAGTTCTGTAGGCTTCTT
ATATCTTTATGGGCATCTCTTTCTTTGGGTTAGAAAAGTTTTCTTCTATA
ATTTTGTTGAAGATATTTTCTGACTCTTTAAGTGNAAAATCTCATTTTTT
TCTAAAACCATCCTCCTTATGGGTGGGCTTCTAATGGGGCGGGAATTCCT
CGGAATTTTTAGTTTAGAAGTTTTTTTCTTTTTCCATTTTCCTTGAAGGT
CTCCTCCAGGTGTCCAGGGAATCTTTCCCCCCTGGAACCCCCCCG

Query= MSMg01no351_l09.b1 MSMg01no351_l09.b1 CHROMAT_FILE:
MSMg01no351_l09.b1 PHD_FILE: MSMg01no351_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:01 2005
         (486 letters)



>mm_chr1_44794135_44795017
          Length = 883

 Score =  779 bits (403), Expect = 0.0
 Identities = 461/485 (95%), Gaps = 9/485 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattgtcctgatgtcacattgataaacaactccttgtgtcactagacttgtaacg 64
           |||||| ||||||||||||||||| ||||| ||||||||||||||| ||||||||||| |
Sbjct: 205 gaattctttgtcctgatgtcacatagataaccaactccttgtgtcaatagacttgtaatg 264

                                                                       
Query: 65  atgctagctcggtgtttaagttaagaggtcatcccatgcaatgggaaagattttcttttc 124
           ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 265 atgttagctcggtgtttaagttaagaggtcatcccatgcaatgagaaagattttcttttc 324

                                                                       
Query: 125 ttttgcgtagtacagatgcatcatcaccaccaagactctctgaatatccatgtgtgctta 184
           |||||| ||||||||||||||      ||||||||||||||||||||||||||| |||||
Sbjct: 325 ttttgcatagtacagatgcat------caccaagactctctgaatatccatgtgggctta 378

                                                                       
Query: 185 ataaaatcaatacagccaaaattgagaagtggtttattctagctattccatgtcctcata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ataaaatcaatacagccaaaattgagaagtggtttattctagctattccatgtcctcata 438

                                                                       
Query: 245 tatttgttcttctgttcccacttaactgaggaccattattttcttccaaactc---tttt 301
           |||||||||||||||||||||||| |||||||||||| |||||||||||||||   ||||
Sbjct: 439 tatttgttcttctgttcccacttagctgaggaccattgttttcttccaaactcttttttt 498

                                                                       
Query: 302 tttttctgcgttaagaacttcaaacctgtaggttctatcaaattggataatattagctga 361
           |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 499 tttttctgcgctaagaacttcaaacctgtaggttctatcaaattggataagattagctga 558

                                                                       
Query: 362 gattgtggattggtctcagctgactcataagaacctaattttgcactttggtggtaccaa 421
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 559 gattgtggattggtctcagctgactcataagaacctaattttgcactttggtggcaccaa 618

                                                                       
Query: 422 gtcctaccagcatttggctgattatataacttatcagtctcatagtctttctgttgtgtt 481
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 atcctaccagcatttggctgattatataacttatcagtctcatagtctttctgttgtgtt 678

                
Query: 482 ggcaa 486
           |||||
Sbjct: 679 ggcaa 683


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 883
Length adjustment: 10
Effective length of query: 476
Effective length of database: 873
Effective search space:   415548
Effective search space used:   415548
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)