NCCTCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCACCTGACCAATACCGAATGGCAGAGAAGCACCTGAAAAA
ATGTTCAACATCCTTAATCATCAGGGAAATACAAATCAAAACAACCCTGA
GATTCCACCTCACACCAGTCAGAATGGCTAAAATCAAAAATTCAGGTGAC
AGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTG
GTGGGATTGCTGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCC
TCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTG
GGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGATACATGCTCCAC
TATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCA
GATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACA
ATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGC
CAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCTC
AAAGGAACTCCCACAATATGTACTCACTGATAAGTGGATATTAGTCCCAA
ACCTATGATACCCTCGATATAAGATATTATTTTCCTTAAAACCTGAAACT
CTAGAAAAATGAAGAACTGAGGTGGGGACCCTATGCCCCCTCCTTAATAA
TGGGGAAAAAAACATN

NNCCGATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTTCCAGGGGGTATACACAG
CAACAGCATAGTCCGTGTGCCCCATATGCTCTCTAGAAAGCTGATCTAAG
ATGCATTTGTCTCTAGTTTCCTCATAAATGGCATTCTCTGGTTAGGACTC
AGGACTTGTGTGTCTGCATGTATTAGATGGTGTCTCCATATCTCAGAGCT
TAGAGGATAAACTGTTCACCCCCTTCTCGCCCTTCCTCAGTATCAATATC
CCTTTCTCCAGACTTTTTCACAGATATTTCTTTCCAAACATCCATCCTTT
TCGTTGACATGTTCTTTCTTTCTTTTCCCCCTCCCAAGAGTTATATGGTT
TTATCAACACCTTTTCTTTTACAAAATGACTCTGCAGACCTGGCAGGGAC
AATCAGCAGCAGCTGAGTTGGCCTAACCCATCCCCTGTTCACTTCTCATC
TCACACCACCTTGAAAATCATTACTTGTTTCTGAAAGTACTTTACAAATT
TCAAATTTTATTGATCCACGTTAAAATACTGAACACAACTGGATAACTAT
CTTTGGCGTGTGTTAGACCTAATGACGTCCGTAAAAAGAATTGGTAAAAA
TGAACTTTTGGTCCCTTTCTCAAATACACCCCCCAGAAGGTTCCGATAAA
GTTGGTCCTTCCTCTTCTTTTTCCTCCCCCCCTTTTCCACTCCTTTTTCC
TGTCTTTTCTCCCGN

Query= MSMg01no352_b17.g1 MSMg01no352_b17.g1 CHROMAT_FILE:
MSMg01no352_b17.g1 PHD_FILE: MSMg01no352_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:31 2005
         (442 letters)



>mm_chr1_51054807_51055647
          Length = 841

 Score =  793 bits (410), Expect = 0.0
 Identities = 434/442 (98%), Gaps = 1/442 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcttccagggggtatacacagcaacagcatagtccgtgtgccccatatgctctctaga 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 641 tttcttccagggggtatacacagcaacagcatagtccgt-tgccccatatgctctctaga 583

                                                                       
Query: 61  aagctgatctaagatgcatttgtctctagtttcctcataaatggcattctctggttagga 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 582 aagctgatctaagatgcatttgtctctagtttcctcataaatggtattctctggttagga 523

                                                                       
Query: 121 ctcaggacttgtgtgtctgcatgtattagatggtgtctccatatctcagagcttagagga 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 522 ctcaggacttgtgtgtctgcatgtattagatggtgtctccatatctcagagcttagagca 463

                                                                       
Query: 181 taaactgttcacccccttctcgcccttcctcagtatcaatatccctttctccagactttt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 462 taaactgttcacccccttctcgcccttcctcagtatcaatatccctttctccagaccttt 403

                                                                       
Query: 241 tcacagatatttctttccaaacatccatccttttcgttgacatgttctttctttcttttc 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tcacagatatttctctccaaacatccatccttttcgttgacatgttctttctttcttttc 343

                                                                       
Query: 301 cccctcccaagagttatatggttttatcaacaccttttcttttacaaaatgactctgcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 342 cccctcccaagagttatatggttttatcaacaccttttcttttacaaaatgactcggcag 283

                                                                       
Query: 361 acctggcagggacaatcagcagcagctgagttggcctaacccatcccctgttcacttctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 acctggcagggacaatcagcagcagctgagttggcctaacccatcccctgttcacttctc 223

                                 
Query: 421 atctcacaccaccttgaaaatc 442
            ||||||| |||||||||||||
Sbjct: 222 gtctcacaacaccttgaaaatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 841
Length adjustment: 9
Effective length of query: 433
Effective length of database: 832
Effective search space:   360256
Effective search space used:   360256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)