BAC Information

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BAC

Clone NameMSMg01-352N19
Chromosome1 (Build37)
Map Location 130,668,316 - 130,668,583
singlet/doubletsinglet
Overlap genenone
Upstream geneCcnt2, Ysk4, Rab3gap1, Zranb3, LOC666778, LOC100042670, EG666784, R3hdm1, LOC667109, LOC100042111, Ubxd2, Lct, Mcm6, Dars, LOC620659, Cxcr4
Downstream geneLOC100042732, Thsd7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352N19.T7 (MSMg01no352_n19.b1)MSMg01-352N19.TJ (MSMg01no352_n19.g1)
ACCAG463883AG463884
length794495
length of high quality
(start - end)
272 (41 - 312)32 (107 - 138)
definitionCHROMAT_FILE: MSMg01no352_n19.b1 PHD_FILE: MSMg01no352_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:33 2005CHROMAT_FILE: MSMg01no352_n19.g1 PHD_FILE: MSMg01no352_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGCGGAATT
CTTTCTGTGACTCTCTATTGTGTTTGAGTTTGTTACTGTGTCCATACAGC
AGGGAGACTGAGACAGAATATTGAAGCAAAATTCAGGGAGCAAAGCTATG
TATGACATCAGTAGAATTTATGCTTATTTAGCTCTGTGTGTGTGTGTGTG
TGTGTATGATGTGTGTGCACGCGCATGTATGCATGGGAATGTTTGTGCAC
ATGTGTGTCTGGAGGTCAGAGGCCTATTGAGGACGGGTGGCTGAACATAG
CTTGCTGTGGCTGTTTTTTCCCAGGCTTTGACCCTAATAATCCAGGTATT
ACCAACTTCCCAGAGGACTCTTGCAAAGCAATACTCCCTAACTCCCTGAT
GAATGACTCTCCCCCCGACTTATACCTAGCCTCCTTCCTCTGCACTATCC
CTCTCCACCCCGTTACCTCACCCTTTCAGACTTCCCTGGCTTTGTCCGCC
CTACCTTCCTCAGCGTCTCCTATTCCCTTATCCCGTCCCTCCCCTACTTT
TTCCTCCCGCGCCCTCTCCCTTTTTTCTTTTCTATCATTATTCTCCCATC
TGAACACCTTTTCTCCTTCTCCTTTAACCCTCTCCCCCCCCCCCTTTCCC
CCTCCAATTTTTTTTTCACTCTCCCCCTTTCCCCCCCTTCCCTTTTCTCT
TTTTTTCTCCATCCCCCATTTTTTTTTTTCTCCTTTTCCCTTTTTCCCCC
TCCCTCCCCTTTATTACTTATCCTATGCCCCACCTCTACAATTT
CTTCTCTTTTTTTGCCCCTCCCTTNNNTNCCTTTCNNTTTCGATATAXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCATATGGAGCCACATCGTGAAGCTCACTAAGAAATAAGAGCAAA
GCACTGTGGGGCTGGAGTCAGCAAACTCAAATCACCGAAACAGCTAGACC
GGTGAGCATGCTTGCAGTCTCCAGCACTGGGGGAGGCAGAGGGCCCCCCC
AGCCAGCTTTAACCTATTTTAAGGGACCCCCAGCCCATGAAAAATTTCCC
TGAAAAAATGGACTCCCCAAGGGTTGAATTGGGGGAAACAAACCCCCCCA
CCTTTTTTTTCACACCCCCTTTCCTTTCCCTTTCCACACCCCTATTTTTT
TTTAAAACACCCTTTTTGTTTTTTACACAAAAAAAGGGGTAAAATATTTT
TTTCCCCTCCACCTACTCTTTGGGTGTTTTTTCACAATAAAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_n19.b1 MSMg01no352_n19.b1 CHROMAT_FILE:
MSMg01no352_n19.b1 PHD_FILE: MSMg01no352_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:33 2005
         (272 letters)



>mm_chr1_130668111_130668783
          Length = 673

 Score =  503 bits (260), Expect = e-147
 Identities = 266/268 (99%), Gaps = 1/268 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctttctgtgac-tctctattgtgtttgagtttgttactgtgtccatacagcaggg 64
           |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctttctgggacatctctattgtgtttgagtttgttactgtgtccatacagcaggg 265

                                                                       
Query: 65  agactgagacagaatattgaagcaaaattcagggagcaaagctatgtatgacatcagtag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 agactgagacagaatattgaagcaaaattcagggagcaaagctatgtatgacatcagtag 325

                                                                       
Query: 125 aatttatgcttatttagctctgtgtgtgtgtgtgtgtgtgtatgatgtgtgtgcacgcgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aatttatgcttatttagctctgtgtgtgtgtgtgtgtgtgtatgatgtgtgtgcacgcgc 385

                                                                       
Query: 185 atgtatgcatgggaatgtttgtgcacatgtgtgtctggaggtcagaggcctattgaggac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 atgtatgcatgggaatgtttgtgcacatgtgtgtctggaggtcagaggcctattgaggac 445

                                       
Query: 245 gggtggctgaacatagcttgctgtggct 272
           ||||||||||||||||||||||||||||
Sbjct: 446 gggtggctgaacatagcttgctgtggct 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 673
Length adjustment: 9
Effective length of query: 263
Effective length of database: 664
Effective search space:   174632
Effective search space used:   174632
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)