BAC Information

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BAC

Clone NameMSMg01-353A23
Chromosome1 (Build37)
Map Location 113,303,901 - 113,304,261
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041429, EG626652, Cdh19
Downstream geneEG666578, Dsel, LOC547247, EG626897, LOC666615
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353A23.T7 (MSMg01no353_a23.b1)MSMg01-353A23.TJ (MSMg01no353_a23.g1)
ACCAG464032AG464033
length762798
length of high quality
(start - end)		369 (51 - 419)---
definitionCHROMAT_FILE: MSMg01no353_a23.b1 PHD_FILE: MSMg01no353_a23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:49 2005CHROMAT_FILE: MSMg01no353_a23.g1 PHD_FILE: MSMg01no353_a23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNCCTCAAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTAAGAAACACCTTAGGAATACCTGATTTGGGGGAAAAAC
AAAAGCTCAACAGGATCACTAGGTTCATAGGAATTACAAGGCACAGAAGC
ATTCATTGGATACTCATGAAACCCCTCTTGTTCCATAGAGATTGATGAAG
TTGGGGCATTTTACAAAAGCATTTAACTAAGATACATATTCTCTAATGAA
ACTGTAACTAATTGACCAATGGGATGTCTTGGTGATATAACTAATATTAA
ATCACTGTAAGAAATCTCAGTAAACTCACTGGTTCATTGATATCAATTTT
AGACAAATGTTTTCTTTTGTCTCAGTTCACATTTTGGTTTGGTTTTGGTT
GGCTGGTTTATTTTGGATGGNTTGGTTCATTTTGAAACCTTTGGTTTCAA
AGGNTTATTTATTTATTTTTTTTGTCTTTCCTATCATGATTAGAAATTCT
GTTCATATGTTTCTTAGAAAAGTCCTCTATCAATAAGATAATCAATGTGA
GTTCCTATAATCCAAATCTGGTGACTTTAATTACTCAAGCCCTTTGGAAA
AACCTTTACTTAGTTGTCCATGCCTATACTCTCTTGTACTTAACCTTTCA
TTCCAATTTCATTGAGTGGAATTTGAGCACGTGGAAACTGTGAGAGAAGG
AGGCCAGTTATCCTGACCCGAAGAGATTGACCTAAAACCACAGACTGTGA
TGGTTGAACTTT

NCCCCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCACTAAACTCATCCTGGCC
CCTGGATTTTTGGGGGGTTGGGGGGGAGTAGTGNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGCGGGGGGGGNNNNNGGNGG
GGGGNGGGCGGGGGCCCGGNGGGNGGCGGGGGGNGGGGGGCCGCCGCCCC
NGCCCNCCCCCCCCNCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCGN
NCCCCCCCCCTCCNCCCCTCTCTTTTCCCCTTCCCCCCCCCTCTCCTCCC
CCCTTTCTCCCCTTTCCTTTCTCTCCTCCCCCCCCCCCTTCCCCTTTTCC
CCTTNCCTCCCCCCNCCCCCCCNCCTTCTCTTTCTCCTCTCCCCTTCGCC
CCCCNCCTCCCCCGCTCTTCCCCCTCCTCCCCTTTCTCCCCTCCCCCCCT
TTCCCTCCCCCCCCTTTCTCCCTCTCTTTCCCTCCCCCCTTTTCCCCCCT
CCCCCCCCTTCCCCCTCTCTCCCTCCTCTCTCTCCCCCCTCTCCCCTTCC
CCCCTTCCCCCCCTTTTCCCCTCCCTTCTCCCCTCCTACCTCTTCTTTCT
CTCTCCCTTCCCCCCGTTCCCCCCCCCCATCCCGTTTCCCCCTCCCTCCC
CCCCCTCCTTTCTCCTTCCCCTTTTCTTCCCCTTCCTCTCCTCATCTTTC
CCTCCCCCCCCCCCTCCCTCCCCCCCCTTTCCCCTCCCTTCCTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_a23.b1 MSMg01no353_a23.b1 CHROMAT_FILE:
MSMg01no353_a23.b1 PHD_FILE: MSMg01no353_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:49 2005
         (369 letters)



>mm_chr1_113303697_113304465
          Length = 769

 Score =  644 bits (333), Expect = 0.0
 Identities = 354/361 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttaagaaacaccttaggaatacctgatttgggggaaaaacaaaagctcaacagg 64
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttaagaaacaccttatgaatacctgatttgggggaaaaacaaaagctcaacagg 264

                                                                       
Query: 65  atcactaggttcataggaattacaaggcacagaagcattcattggatactcatgaaaccc 124
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atcactgggttcataggaattacaaggcacagaagcattcattggatactcatgaaaccc 324

                                                                       
Query: 125 ctcttgttccatagagattgatgaagttggggcattttacaaaagcatttaactaagata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctcttgttccatagagattgatgaagttggggcattttacaaaagcatttaactaagata 384

                                                                       
Query: 185 catattctctaatgaaactgtaactaattgaccaatgggatgtcttggtgatataactaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catattctctaatgaaactgtaactaattgaccaatgggatgtcttggtgatataactaa 444

                                                                       
Query: 245 tattaaatcactgtaagaaatctcagtaaactcactggttcattgatatcaattttagac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tattaaatcactgtaagaaatctcagtaaactcactggttcattgatatcaattttagac 504

                                                                       
Query: 305 aaatgttttcttttgtctcagttcacattttggtttggttttggttggctggtttatttt 364
           |||||||||||||||||||||||||||||||| |||| ||||| ||| ||| ||||||||
Sbjct: 505 aaatgttttcttttgtctcagttcacattttgttttgtttttgtttgtctgttttatttt 564

            
Query: 365 g 365
           |
Sbjct: 565 g 565


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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