BAC Information

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BAC

Clone NameMSMg01-353B24
Chromosome1 (Build37)
Map Location 153,633,552 - 153,834,843
singlet/doubletdoublet
Overlap geneEdem3, 1700025G04Rik
Upstream geneEG545370, LOC668040, LOC676758, EG668050, LOC668055, 3110040M04Rik, LOC100043286, Ivns1abp, 1200016B10Rik, 1190005F20Rik, Rnf2, Niban
Downstream geneLOC668076, 5730449L18Rik, Glt25d2, Rgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353B24.T7 (MSMg01no353_b24.b1)MSMg01-353B24.TJ (MSMg01no353_b24.g1)
ACCAG464080AG464081
length772806
length of high quality
(start - end)		490 (51 - 540)339 (80 - 418)
definitionCHROMAT_FILE: MSMg01no353_b24.b1 PHD_FILE: MSMg01no353_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:54 2005CHROMAT_FILE: MSMg01no353_b24.g1 PHD_FILE: MSMg01no353_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(153,633,552 - 153,634,037)(153,834,505 - 153,834,843)
sequence
NAAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTACCGAATGAGAGAGGCTTGGTCCATGGAAGCAGAAAGAA
CTGTGGTTCCCTGTTAGGTCCCCATTAGACTCAGTTCCAAATCATGTTAA
AGATGAAACCAACTAACTCTTTGAAAAAGTGCCAGGAAAGTATTTCCCCT
GAAGTCCTAGAAACCATGAAGGCCATCACTCCACATGGAGAAGGGAGAAG
GACGGCAGCTTTGCCAGCAGTGGTTGCAGAGCAGTGACTCAGGTAGCACC
AGGGTTCGTGCCTGGAGAGCTCCTGGGGGCTGTGGAAGTGGTGGGATGAT
TGCTGGCCCAGAAATGCCACAGAAGTAGGCTATAGCAAGGGCTGGCAGGA
CCTGCATTATTATCTTCGAGAATCCAAAGACAGGTGGGCAGGCAGCAGCT
GTGGAAGTATACACCCACACACTAAAATGCCGTCATTAATCCTATGCTAC
TACACAGTTAAAATGTGTGTCTACACTGTTGGGCAGGAATGGTGATTTTC
TTCTCTGTGTATATTAGNTTATTTTAATTATATTTTATCAGTTAGAACAA
GATCCTCTCCTCCTCCCTATACACCCACCTTTAAATTCTTTCTCAGAAAA
CAACCAAACTCCAGTACTACAACAAAACCCTAGAAAACAATATATTACCC
CCCAAAGGAAAACAACTGTTACCAAATAAAACCACCCATAAAACCGGGGA
GGCCCCTTATTCCTTTCCAACT

NNNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGATGGGCACACCGGGTAG
GCTCGGCAGAGCAGAGCAAGGGCCCTCTCAGATGCTGCTCTTAGAAGCAA
ATGATCTACTATGTCATACATTTCAGATGTTTTACCTCATAGTGACAAAG
ACGTTCAGTCAGATATAGAGGTTGGTAGTGTTTATTGAGAGGACTAAAGA
CACTTTTGTAGCGTTCCGCCTCCCTACAATCATGACGTTCTACACAGTCT
GTAGGGTCAACTCCAGAGAACTTCATTTTGCAATGGATGATCATACACTG
TCCTAATCAGCCATTGTGTAAATCCGTGAGTGTGCTTGCTGGAGGAAGTG
ACTGCAGATGAAACAGCTGCAGCGTATTAGAAAGACAACCTGTGTTTCTG
GCCCTCCAGGGAGTGGTGCGGTTACCGGCCTTATGCTCCTGGAACCCTGT
GCCCCTATACCACCCTTTTTTTGCCGTTAATTGCCGCCGCCCCTTAACCT
GGCCCCCTAAAAAGTCCCCCATTCCCACCTTTTTTTGCTCTTCCCTAACT
ATTTCCCCGGTTCCGTCGCGTTCTTTCTCCTATCCCCTTTCCCGCTATCT
TGGCGTTTCAATTTCCCCCTTACGGTTCCCGTGTATTCCTCCTTTTTCCC
TTTTTTCACGCGTTTCCTTACCCGTTTTGCCCTACTTTTTCCGTTTTCTT
TTCCCCCTATCTTTTCTCCGTTTTTCCTTTCCCTTTCTCTTCTCCCTTTT
CTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_b24.b1 MSMg01no353_b24.b1 CHROMAT_FILE:
MSMg01no353_b24.b1 PHD_FILE: MSMg01no353_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:54 2005
         (490 letters)



>mm_chr1_153633348_153634237
          Length = 890

 Score =  924 bits (478), Expect = 0.0
 Identities = 484/486 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaccgaatgagagaggcttggtccatggaagcagaaagaactgtggttccctgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaccgaatgagagaggcttggtccatggaagcagaaagaactgtggttccctgt 264

                                                                       
Query: 65  taggtccccattagactcagttccaaatcatgttaaagatgaaaccaactaactctttga 124
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taggtctccattagactcagttccaaatcatgttaaagatgaaaccaactaactctttga 324

                                                                       
Query: 125 aaaagtgccaggaaagtatttcccctgaagtcctagaaaccatgaaggccatcactccac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaagtgccaggaaagtatttcccctgaagtcctagaaaccatgaaggccatcactccac 384

                                                                       
Query: 185 atggagaagggagaaggacggcagctttgccagcagtggttgcagagcagtgactcaggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atggagaagggagaaggacggcagctttgccagcagtggttgcagagcagtgactcaggt 444

                                                                       
Query: 245 agcaccagggttcgtgcctggagagctcctgggggctgtggaagtggtgggatgattgct 304
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 445 agcaccagggttcgtgcctggagcgctcctgggggctgtggaagtggtgggatgattgct 504

                                                                       
Query: 305 ggcccagaaatgccacagaagtaggctatagcaagggctggcaggacctgcattattatc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggcccagaaatgccacagaagtaggctatagcaagggctggcaggacctgcattattatc 564

                                                                       
Query: 365 ttcgagaatccaaagacaggtgggcaggcagcagctgtggaagtatacacccacacacta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttcgagaatccaaagacaggtgggcaggcagcagctgtggaagtatacacccacacacta 624

                                                                       
Query: 425 aaatgccgtcattaatcctatgctactacacagttaaaatgtgtgtctacactgttgggc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaatgccgtcattaatcctatgctactacacagttaaaatgtgtgtctacactgttgggc 684

                 
Query: 485 aggaat 490
           ||||||
Sbjct: 685 aggaat 690


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no353_b24.g1 MSMg01no353_b24.g1 CHROMAT_FILE:
MSMg01no353_b24.g1 PHD_FILE: MSMg01no353_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:54 2005
         (339 letters)



>mm_chr1_153834305_153835043
          Length = 739

 Score =  625 bits (323), Expect = 0.0
 Identities = 335/339 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgatgggcacaccgggtaggctcggcagagcagagcaagggccctctcagatgctgct 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 539 attgatgggcacaccgggtaggctcggcagagcagagcaagggccttctcagatgctgct 480

                                                                       
Query: 61  cttagaagcaaatgatctactatgtcatacatttcagatgttttacctcatagtgacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 cttagaagcaaatgatctactatgtcatacatttcagatgttttacctcatagtgacaaa 420

                                                                       
Query: 121 gacgttcagtcagatatagaggttggtagtgtttattgagaggactaaagacacttttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gacgttcagtcagatatagaggttggtagtgtttattgagaggactaaagacacttttgt 360

                                                                       
Query: 181 agcgttccgcctccctacaatcatgacgttctacacagtctgtagggtcaactccagaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 agcgttccgcctccctacaatcatgacgttctacacagtctgtagggtcaactccagaga 300

                                                                       
Query: 241 acttcattttgcaatggatgatcatacactgtcctaatcagccattgtgtaaatccgtga 300
           |||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 299 acttcagtttgcaatggatgatcatacactgtcctaatcagccattgtataaatctgtga 240

                                                  
Query: 301 gtgtgcttgctggaggaagtgactgcagatgaaacagct 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 gtgtgcttgctggaggaagtgactgcagatgaaacagct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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