BAC Information

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BAC

Clone NameMSMg01-353F10
Chromosome1 (Build37)
Map Location 116,755,730 - 116,756,139
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC227506, Cntnap5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353F10.T7 (MSMg01no353_f10.b1)MSMg01-353F10.TJ (MSMg01no353_f10.g1)
ACCAG464241AG464242
length779770
length of high quality
(start - end)		490 (51 - 540)403 (78 - 480)
definitionCHROMAT_FILE: MSMg01no353_f10.b1 PHD_FILE: MSMg01no353_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:11 2005CHROMAT_FILE: MSMg01no353_f10.g1 PHD_FILE: MSMg01no353_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAACTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATTGTATATTTTGTATGTTAGCACTCTGTCAGAAGTAGGG
ATGGTAAAGACATTTCCACAATCTGTGGGTTGCTGTTTTGTCCCATTGAA
AGTGTCCTTCACCTTACAGAAGCTTTTCAAATTTAAGAGATCTCATTTGT
CAATTATTGATCACAGAGGATAAGCCATAGATGTTCTGTTCAGAAAAGTT
TCACCTATGTCAAGGTGTTTGAGGTTCTTTTACACTTTCTCTTCTGTTAG
ACTCAGTGTATCCAGTTTTATGTGGAGGCATTAAATCACTTGGAATTGAG
CTTTTTACAAGGAGATAAGAATGGGTCAATTTGCGTTCTTCTACATGCCA
ACCAGCACCATTTGTTGAAAATGCTATTTTTTCGCCCACTGCACGGTTTT
GGCTCCTTTGTCAAAGATTAAGTGACTGTAGTTGTGTTAGCTCATTTCTG
GGTCTTCATTTCCATTCCACTGATCTAACTGCCTGACTCTGAACCAATAC
TATGCAGTTTTTTTACACTATTGCTCTCTACGATATCTTGAGTTCAGTAA
CGGGTAATCCCCAGAAAGAACTTTTTATCTTGAAAAAGAATTTTTGTTAT
CCCGGGCTTTTCGCTCTCTCCCAAAAACTTTAACAATGGCCCTTTCCATT
CTGTGGAGAAATAAATTTTTATTTTTCATTAAACAACCATTGTATCTGTC
CTACTGTCTTCTCCATAACAAATATATAC

NNNCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATT
TTTAATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTCAT
ATATATTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTT
TCCCAATCTGCAATGCTTATTATTAACATTATTGAAAATTGGACTTACCC
ACAAATAATATCTATTGATTCTACATAAATATAAACATGAGACAAAAAGA
ATTATTTGAGACCAATGGAGAATATTATTTTTAAAGTCCTAGGTGAAATT
CCCATGTAAATATGTCCACACACAATCATCATAGAGCATTCAATCACTTA
AGCACATTGTAATTTATAGCATGCCTGTACTGTGCAAACTTTAGTGGGGA
CACATGAACAAATATTTGTTCATCCCAGAAGGGTCACTAGTGACAGACTA
CAGAAATGATTTCTCCTAACTCTAGCTATGACCAGCGAGTTTAATAATGT
TATTTACAGACACACAGAAGAAATTTTTTTCTCAGGGACCTAGGTGACTT
ACAAGATAATGGGCTTCCCGAAAACCCTTGTGGATTTTTGTGTGGATGAA
ACACGGCCGTTTTATCTTCTTATTCCCTTTTTCACCCTCCTCTATCGCTG
TGTCCTTTTCTTGCCGTTCATATCCCCTCCCCCTCCCTTTTTTCATTTTT
TTTATATCTCCCTTGTTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_f10.g1 MSMg01no353_f10.g1 CHROMAT_FILE:
MSMg01no353_f10.g1 PHD_FILE: MSMg01no353_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:11 2005
         (403 letters)



>mm_chr1_116755537_116756339
          Length = 803

 Score =  659 bits (341), Expect = 0.0
 Identities = 391/411 (95%), Gaps = 9/411 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgttcagttctgagcccca-tttttaatggggttatttgattttctggagtccacctt 59
           ||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||
Sbjct: 194 tttgttcagttctgagccccattttttaagggggttatttgattttctggattccacctt 253

                                                                       
Query: 60  cttgagttctt------catatatattggatattagtcccctatctgatttaggataggt 113
           |||||||||||       ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 254 cttgagttctttatatatatatatattggatgttagtcccctatctgatttaggataggt 313

                                                                       
Query: 114 aaagatcctttcccaatctgcaatgcttattattaacattattgaaaattg-gacttacc 172
           ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 314 aaagatcctttcccaatctgcaatgcttattattaacattattgaaaat-gagacttacc 372

                                                                       
Query: 173 cacaaataatatctattgattctacataaatataaacatgagacaaaaagaattatttga 232
           ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 373 cacaaataatatctaatgattctacataaatataaacatgagacaaaaaggattatttga 432

                                                                       
Query: 233 gaccaatggagaatattatttttaaagtcctaggtgaaattcccatgtaaatatgtccac 292
           ||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 433 gaccaatggagaagaatatttttaaagtcctaggtgaaattcccatgtaaatatatccac 492

                                                                       
Query: 293 acacaatcatcatagagcattcaatcacttaagcacattgtaatttatagcatgcctgta 352
           |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 493 acacaatcatcatagagcgttcaatcacttaatcacattgtaatttatagcatgcctgta 552

                                                              
Query: 353 ctgtgcaaactttagtggggacacatgaacaaatatttgttcatcccagaa 403
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ctgtgcaaactttagtggggacacatgaacaaatatttgttcatcccagaa 603


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space:   312836
Effective search space used:   312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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