BAC Information

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BAC

Clone NameMSMg01-353F16
Chromosome1 (Build37)
Map Location 55,750,218 - 55,750,462
singlet/doubletsinglet
Overlap genenone
Upstream geneAnkrd44, Sf3b1, Coq10b, Hspd1, Hspe1, LOC381258, Prei3, EG627998, Rftn2, Mars2, LOC666793, Boll, EG632964, LOC667237, LOC626009
Downstream gene9130227L01Rik, Hsfy2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353F16.T7 (MSMg01no353_f16.b1)MSMg01-353F16.TJ (MSMg01no353_f16.g1)
ACCAG464253AG464254
length814783
length of high quality
(start - end)
64 (69 - 132)245 (79 - 323)
definitionCHROMAT_FILE: MSMg01no353_f16.b1 PHD_FILE: MSMg01no353_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:12 2005CHROMAT_FILE: MSMg01no353_f16.g1 PHD_FILE: MSMg01no353_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTTTATCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCAGCCTTCAGCTTTTGACCAGGTTTGAAATACTAGTTCTG
TGTCCTACTTTGTGAAGGTGGTCTTGGATTCAAGCAGAAAGTGGTTGTCT
ATTTATAAATGATGAGAATGGGGTGGGAGTATAGAGAGATTTAGGATAGA
TGTAATAGACCCTCTTCTTTATNNNTTGAGGGTTCTCACTTGCTTAAACT
GGAATTGATCTTGTCNNCCNCATTTTGGAACGTTCCTTGACCCCTTGAAC
CCCGTCCCAAAAGAAATTTTCACTTCTTTTCCGTTAACCGGTGTTTTCTT
TCCCCAAGGCTTTTTCTTCTCTTTTTCCTGGGTTCCCCAAATATGTGGCT
ACCCCGTTTTTTTTTTGGGGTTTTTCAGCTTCTTTTTAGACTTTTTTTTA
AAAAGTTTTTTTCCTTTTACCCCCCGCCTTTTTTTTTTAATCCTTTTTTT
TTTAATAAATTTTTTCTTTTCTTTTTACAACTTTTTTTTTATCCCCTTTC
TCTCTTTTTTTTTTCTGCCTTTCTTTTCAAATTTTCTCTTCTCTTTTTTC
TCCTACTTTTTTTCGTTGGGGCCCCTCTTTCCTTCTTCTCNCCCCTCTTT
TTTTCTCTCTCTCTTTTTCCCCCTTCTCTCTCTTTTTTTTCTTTTCTTTT
CCCTTTCTCTTCTTTTCTCCTCCCTCTTCTCTTTTTTTTTCCTTTTCCCC
CTCCCNCCCCCTTTTTTTTTTCTTCTTTTTTTTCTCTTCTTTCTATTTTT
TTTTTTTTATTTTG
NNNCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACCTGCTCCACAGTGCTAGGTT
CTTGCCTGGACTTGAAAATCATATGTGATTATAAAACATATCCCAAAGCG
CCTTAAAACTTGGAATCTGAAAATGATGTGATTCTCATGTTGTCACCTCA
GAAAAGATCAAATCCAGTTATTGTAAGTCCCCAAGTGATCTAGAAAGTGG
TCATGCATGTATGAACAGATAATTAGTATGTCTACTGATGGCTAGGGCCA
AGATTCCTCATATTGAAAACTGCTGTTTTAGATTCAGGATGCTAAGTAGT
TCTCTAGTTCTGCCATAGAAGAAGAAAATGGCTGGCCCTAGACAACAATC
CTCACACTGTTACTGCAATGTTCTTGAATGTGCAGGCTGGAAGAAGGAGT
AGGGGCATCATTTCATGTCTTGCAGGACAGGAAGCCTCAAGTCTCTTTTT
GGAACCACTTAATTCCCAAGGTCACCTGGACAGTGTCCTCTATCTGAAAT
CTATATTTCCCTGCCCAAATGTAGTTTCCCATTGCTTCCTGTATTAAGGC
GTTTGTTACCTTTTTTTCTCCTTGTCCCCTTTCACTTTTGTATTTTTTTC
GTATTCCCTTATAACTTCCCTACCTCTCCTCAAATTTCCCTTTTTCCCCC
TTTTTTTTCCCATTTTCCATTTTTTTCCCTTTTTTTTCCCGTTTCTTTCT
CCTTTATCTTTTCCTTTTTTCCCTCCTTCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_f16.g1 MSMg01no353_f16.g1 CHROMAT_FILE:
MSMg01no353_f16.g1 PHD_FILE: MSMg01no353_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:12 2005
         (245 letters)



>mm_chr1_55750018_55750662
          Length = 645

 Score =  458 bits (237), Expect = e-133
 Identities = 243/245 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctgctccacagtgctaggttcttgcctggacttgaaaatcatatgtgattataaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acctgctccacagtgctaggttcttgcctggacttgaaaatcatatgtgattataaaaca 386

                                                                       
Query: 61  tatcccaaagcgccttaaaacttggaatctgaaaatgatgtgattctcatgttgtcacct 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 385 tatcccaaagcgccttaaaacttggaatctgaaaacgatgtgattctcatgttgtcacct 326

                                                                       
Query: 121 cagaaaagatcaaatccagttattgtaagtccccaagtgatctagaaagtggtcatgcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagaaaagatcaaatccagttattgtaagtccccaagtgatctagaaagtggtcatgcat 266

                                                                       
Query: 181 gtatgaacagataattagtatgtctactgatggctagggccaagattcctcatattgaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 265 gtatgaacagataattagtatgtctactgatggctagggccaagattactcatattgaaa 206

                
Query: 241 actgc 245
           |||||
Sbjct: 205 actgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)