BAC Information

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BAC

Clone NameMSMg01-353J20
Chromosome1 (Build37)
Map Location 16,094,798 - 16,095,186
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039949, LOC100039959, Kcnb2, Ppia-ps1_109.1, Terf1, Gm106, LOC665434, 4930444P10Rik, Rpl7
Downstream geneRdh10, EG665282, Stau2, Ube2w, Tceb1, LOC665480, Tmem70, Ly96, LOC100040056, LOC665496, EG545306, Jph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353J20.T7 (MSMg01no353_j20.b1)MSMg01-353J20.TJ (MSMg01no353_j20.g1)
ACCAG464449AG464450
length769766
length of high quality
(start - end)		469 (51 - 519)390 (80 - 469)
definitionCHROMAT_FILE: MSMg01no353_j20.b1 PHD_FILE: MSMg01no353_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:32 2005CHROMAT_FILE: MSMg01no353_j20.g1 PHD_FILE: MSMg01no353_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAACTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTAAAAAGTCTTTAATTTCTTTCTTTATTTCTTCCTTGACC
AAGTTATCATTGAGAAGCGTGTTGTTCAACTTCCATGTGTATGTGGGCTT
TCTGTTGTTTTTGTTCCTATTGAAGACCAGACTTAATCCATAGTGATCTG
ATAGGATGCATGGGATCATTTCAGTCTTCTTGTATCTATTGAGGTCTGTT
TAGTGACCAATTATATGCTCAATTTGGGAGAAGGTACCGGGGGGTACTGA
GAAGAAGGTATATTCTTTTGATTTAGGATGAAATGTTCTATAGATATCTG
TTAAATCCATTTGATCTATAACTCCTGTTAGTTTCACTATGTCTTTGTTT
AATTTGTGTTTCCCTGATCTGTCCATTAATGAGATTAGGGTGTTGAAGTC
CCTCACAATTATGTGTGTGATGCAATGAGTGCTTTTAGTTTTAGTGAAGT
TTCTTTTATGAATATGGGTGCCCTTGCATTTGGAGCATAGATGTTCAGAA
TTGAGAGGTCTTTTTTGCGTAAAGCTTCCTTTTGTGCGCTATTAACGGTT
CCTCCCTCACCTCTCCTTAAGAATAAGCGCCCAAAAGCCCCTTTCCCCCC
TCTTTTACCCGGTCAGCCTGTTCATTTTTTTTTATCCATCTTCTCTTTTT
AATCTTTTTCCCCCTTTTCCCCCTTTCCCCCTCCTTTTCTCCACTTCATC
CCCCTCTCCCTTTAATCCG

NNNTTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTGGACCCAAAAGGCATGTT
CAGGGATGTGAACTACAAGTCCCAGCATGCATCGCTGCATAACCCGCGGG
GCTGGAGGGCGACGTTGACCGACACTCTGGGCAGCCTTCGCGGCGGTGAT
TCCCATTAGGCTCACTAGAGTATGAGGCTTCACGTCCTCAGCGGCTAGCT
GAGCTATGAAATCACTGTCTGTCACCTCCTCCGGCTCTCTGCGGCCCGTG
GCCACGCAGCCCTGCTCCCCCACCTCGGCTGCGCTGCCGAGGTCCTTTTT
CCGCCCGACTGCCGGGCTGTCTTCCGCAGCGCCTGATCATCGGCCGCCAG
GTCCACAGTCCCTCGGTTGGCGAAAGCAGCGAGACCGGGAAGAGTGATGA
CCCGAAGGTCCGAGGAGGATGTGGGCGTTCTCCCTTGCCCCCTCCTCCTC
CGCTAAGTTTTGCGGTACCTCCCCCCCGTTTCCTTTTCCCCCTATTTTTC
CCCCTTTCTCCCCTTTTCTTCCCGTTCCTTCCTGTAACCCCCCTTCCCTC
CCTTTTTTTCCCTTTCCCCCTTCCCTTTCTTTCCTTTTCTTTTCCCGCTT
TCTTCCCTTTTCTCCCCTTCTTCCCCTTCTCCCCCTTTCCTTCCCGTTTT
CCCTTCCTTTCCTTTCTTTTCCCCTTTCCTCCCCCATATCCATTCCCTTC
CTTCCGCCTCTATCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_j20.g1 MSMg01no353_j20.g1 CHROMAT_FILE:
MSMg01no353_j20.g1 PHD_FILE: MSMg01no353_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:32 2005
         (390 letters)



>mm_chr1_16094597_16095386
          Length = 790

 Score =  745 bits (385), Expect = 0.0
 Identities = 388/389 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   ttggacccaaaaggcatgttcagggatgtgaactacaagtcccagcatgcatcgctgcat 61
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 202 ttggacccaaaaggcatgttcagggatgtgaactacaagtcccagcatgcgtcgctgcat 261

                                                                       
Query: 62  aacccgcggggctggagggcgacgttgaccgacactctgggcagccttcgcggcggtgat 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aacccgcggggctggagggcgacgttgaccgacactctgggcagccttcgcggcggtgat 321

                                                                       
Query: 122 tcccattaggctcactagagtatgaggcttcacgtcctcagcggctagctgagctatgaa 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tcccattaggctcactagagtatgaggcttcacgtcctcagcggctagctgagctatgaa 381

                                                                       
Query: 182 atcactgtctgtcacctcctccggctctctgcggcccgtggccacgcagccctgctcccc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atcactgtctgtcacctcctccggctctctgcggcccgtggccacgcagccctgctcccc 441

                                                                       
Query: 242 cacctcggctgcgctgccgaggtcctttttccgcccgactgccgggctgtcttccgcagc 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cacctcggctgcgctgccgaggtcctttttccgcccgactgccgggctgtcttccgcagc 501

                                                                       
Query: 302 gcctgatcatcggccgccaggtccacagtccctcggttggcgaaagcagcgagaccggga 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gcctgatcatcggccgccaggtccacagtccctcggttggcgaaagcagcgagaccggga 561

                                        
Query: 362 agagtgatgacccgaaggtccgaggagga 390
           |||||||||||||||||||||||||||||
Sbjct: 562 agagtgatgacccgaaggtccgaggagga 590


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 790
Length adjustment: 9
Effective length of query: 381
Effective length of database: 781
Effective search space:   297561
Effective search space used:   297561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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