NNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGCCATCCTTGAGATAAATTAGGTGTTGTCTGCACCTGC
AACCAATACTCCGAACCCTGTGCATTACACAAGGAACCCCAGTTGAAGAA
ATAAGTGAGAAGAGACAAATTGATCTACTGTAGATCCCTGCTATGCCTGT
GACAATGTAGGCAATTATTTAATCCATCTAAGGTGCAGATGATCCACGAA
GAATGCAATGTAATCTTGACCACTTTGTAAGCGTCACATAAATTTGAAGT
GTAAGTGAGGGTAGTATTAAGCACTGTGTTTGGTGTATATCAAAAGCCAA
AATGGCTTTATTGATTCTCAATATTGCAGACATGAGTGACTTGCAAATTA
TGACACACATCATTGTTTCCGTGGATCGTAAGTAATAAGATACAGGACAA
TAAATGTTTGAACATTGCTAGCAAAATGCACTATGCATCTTGATTACTTG
GAGTTAAAACAACCAACTACAAGAACTGTGCTTCTTTGAACTTCCCTGAC
CTGTACTTTTAAACAATAAATTATTTGTTATTACCTATAAGTTATTATAC
ATATTTTAACATTTAATTTGGTACTATAGTATCCTAGGAAAATATGGCAT
CTTAATTCTATATTCCTTGGNGGAGTGCTCTGCCTAATCAAAGGGCAGAC
ATAGGTGCCTGTGAAATGCTTAGCTACAGACAAGAATTTACAACATACCA
CTCCC

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGATATAGCTAAGCCTTCG
CCAGTGTTCCAACATCCTAGAAAGTCCTTGAGCTGACCATGGGCTTGGAA
TTCAATAAGAATGTTGTCTATTCAGTGACATTCAGAACTGTCTCTGGTAT
TACACTATCACTTGGAATAAAAGCCAAGCTGCTCCCATATACAGGAATTT
ACAATGGTTTAGGAAGTAGATCAGGCTGTGGTTTTAGAATATTGCATTAT
TCATGAGATGGTTAGCTAGAGCGGAACTCCCTAATTAGAGCCATGACTTG
GGTGTGAAAGCCCTTGCCCTAGGAGTGTAAAGACCTCACACCTGGCTCCT
AAGACTATAGCTGACCTTAGATAGGGCTGACTTTGTCTCAGTTGTTTTAT
TGCCCAGTTCCTGCCAGTCTTTGTGTTTACATTCCTCTGTTTTGTGTAAG
AGTCATTAAGCATCCGGTAACCTCATTTGTACATTGCTAATGTGTCACCC
AACTTCCCTATTTTCTTCTGTATAAAAAGTTTGATGCTCAATTTTGAAAA
TTACATTGGAAAATTACATTAAATTCTTCACCACCCCCCTGTGTGCCTCT
GGCTGTCATTCAATTCCTGCCGACTACTTTGCCCCCCTGGGACAAGAAAA
CCCCTTCCCTCCCAAAAAAGGCACCCTAAGGGGTTGGCCACTTAAAAAAA
CGTTTCCCCTAAGAATCTCTCCAATGG

Query= MSMg01no353_l11.b1 MSMg01no353_l11.b1 CHROMAT_FILE:
MSMg01no353_l11.b1 PHD_FILE: MSMg01no353_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:40 2005
         (581 letters)



>mm_chr1_33392196_33393176
          Length = 981

 Score = 1035 bits (535), Expect = 0.0
 Identities = 575/609 (94%), Gaps = 32/609 (5%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagccatccttgagataaattaggtgttgtctgcacctgcaaccaatactccgaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 gaattcagccatccttgagataaattaggtgttgtctgcacctgcaaccaatactccgaa 232

                                                                       
Query: 65  ccctgtgcattacacaaggaaccccagttgaagaaata---------------------- 102
           ||||||||||||||||||||||||||||||||||||||                      
Sbjct: 233 ccctgtgcattacacaaggaaccccagttgaagaaataggctatataaataatgttaggg 292

                                                                       
Query: 103 ----------agtgagaagagacaaattgatctactgtagatccctgctatgcctgtgac 152
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 attaaacataagtgagaagagacaaattgatctactgtagatccctgctatgcctgtgac 352

                                                                       
Query: 153 aatgtaggcaattatttaatccatctaaggtgcagatgatccacgaagaatgcaatgtaa 212
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 aatgtaggcaattatttaatccatctaaggtgcagatgatccacgaagaatgcaatgtaa 412

                                                                       
Query: 213 tcttgaccactttgtaagcgtcacataaatttgaagtgtaagtgagggtagtattaagca 272
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tcttgaccactttgtaagcgtcacataaatttgaagtgtaagtgagggtagtattaagca 472

                                                                       
Query: 273 ctgtgtttggtgtatatcaaaagccaaaatggctttattgattctcaatattgcagacat 332
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ctgtgtttggtgtatatcaaaagccaaaatggctttattgattctcaatattgcagacat 532

                                                                       
Query: 333 gagtgacttgcaaattatgacacacatcattgtttccgtggatcgtaagtaataagatac 392
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gagtgacttgcaaattatgacacacatcattgtttccgtggatcgtaagtaataagatac 592

                                                                       
Query: 393 aggacaataaatgtttgaacattgctagcaaaatgcactatgcatcttgattacttggag 452
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 593 aggacaataaatgtttgaacatcgctagcaaaatgcactatgcatcttgattacttggag 652

                                                                       
Query: 453 ttaaaacaaccaactacaagaactgtgcttctttgaacttccctgacctgtacttttaaa 512
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ttaaaacaaccaactacaagaactgtgcttctttgaacttccctgacctgtacttttaaa 712

                                                                       
Query: 513 caataaattatttgttattacctataagttattatacatattttaacatttaatttggta 572
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 713 caataaattatttgttattacctgtaagttattatacatattttaacatttaatttggta 772

                    
Query: 573 ctatagtat 581
           |||||||||
Sbjct: 773 ctatagtat 781


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space:   554441
Effective search space used:   554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)