BAC Information

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BAC

Clone NameMSMg01-353O10
Chromosome1 (Build37)
Map Location 58,255,693 - 58,256,007
singlet/doubletsinglet
Overlap geneAox3
Upstream geneLOC383509, 1700066M21Rik, 1110034B05Rik, 9430016H08Rik, LOC667339, 2810022L02Rik, Kctd18, Sgol2, Aox1
Downstream geneAox4, Aox3l1, EG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806, Ndufb3, EG667397, Als2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353O10.T7 (MSMg01no353_o10.b1)MSMg01-353O10.TJ (MSMg01no353_o10.g1)
ACCAG464665AG464666
length767784
length of high quality
(start - end)
382 (49 - 430)315 (81 - 395)
definitionCHROMAT_FILE: MSMg01no353_o10.b1 PHD_FILE: MSMg01no353_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:54 2005CHROMAT_FILE: MSMg01no353_o10.g1 PHD_FILE: MSMg01no353_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTGATCTTTCCAGAACTTTTATCATGAATGGGTGTTGGATCT
TGTCAAATGCTTTTTCTGCATCCAACGAGATGATCATGTGGTTTTTGTCT
TTGAGTTTGTTTATATAGTGGATTACATTGATGGATTTTCGTATATTAAA
CCATCCCTGCATTCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTA
CTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTT
GCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGG
ATCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGT
TGGGTAGCGTACTTTCCACTTCTATCTTGTGAAAAAGTTTGTGCAGAACT
GGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCGTC
TGTTCCTGGGCTTTTTTTGGCTGGGAGACTATTTATAACTGCTTCTATTT
CTTTAGGGCATATGCGACTGTTTATAAAGCCTACTTGTTCCTGATTCTAC
CCTTGCTCCCTGATTTCTTGCCCAGATATTTCGCCTCTTCTCGCCCATCT
TTTTTCTTGCCCTTTCCTGTTTTTCTCCTTTCTGACAACAGTATCTGATC
TTTTTCTTTGATATTATTTTTATTATCACGTTGTTAAAGTCTCACTAATT
TCCCCCTCTTGTTTTTC
NCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCTTATCCCACAAATAGA
ATTTCTCACAGATTCTTTCAAAAGCATAAGCTGATGTAGCATAATTAATT
TAAAGATCTTTTATTTGTCAAATGCTTCCTTTATATGTGATGCATATGTA
ATATGTAAGACAAGATGGCCATCTGGGATGGCAATCCTGGAAGGGAGAGG
CAAGTATATGCTGGATGACGTTGGGCCGAGAGCAATGGATATCCGTTACA
CCTGATGGATAACAGTGGTGAATGATAGACCACAGTGATCTTGGAGCAGC
TGCACAAGAGCAGAACTTACAAGTGTGCTGCCCTAGGGAGCAGGACACGG
GCAGAATTTTGATTTCCACCTCACACCACTAGATGTTCTCAAGTTGGAGG
GGTGAGTACTACTTTTGCAAATTCAAGTTCTGACGCTTCTGAAAGTGAGA
GGGGATTTGATTGGTAAGCTGACTTTCCCGACTGCTAAACACACTCATCG
TCTACACGTCTCTCTCCTTGTTTACGTATCCCCTATTCCTCCCTACCATT
CTCCCTTTCGTTGCTTTTTCCCTTCCCGAGCTCTCTCCCAGTGCTTCCCC
CTCATTCTGTTCCCTGCCCTTACCTTTCCCTTGTTTCCTGCCTTTTCCCC
TTTTTTCCTTACCCTTCCCCTTTCCCTTTTCCCCTTTCCCTATTCTTCCG
TTTCTTCTTCCCCTTTCCCGTTCCTTTCGCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_o10.g1 MSMg01no353_o10.g1 CHROMAT_FILE:
MSMg01no353_o10.g1 PHD_FILE: MSMg01no353_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:54 2005
         (315 letters)



>mm_chr1_58255493_58256207
          Length = 715

 Score =  571 bits (295), Expect = e-167
 Identities = 310/315 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcttatcccacaaatagaatttctcacagattctttcaaaagcataagctgatgtagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 attcttatcccacaaatagaatttctcacagattctttcaaaagcataagctgatgtagc 456

                                                                       
Query: 61  ataattaatttaaagatcttttatttgtcaaatgcttcctttatatgtgatgcatatgta 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 455 ataattaatttaaagatcttttatttgtcaaatgcttcctttatatgtgatgcacatgta 396

                                                                       
Query: 121 atatgtaagacaagatggccatctgggatggcaatcctggaagggagaggcaagtatatg 180
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 395 atatgtaagacaagatggccatctgggatggcgatcctggaagggagaggcaagtagatg 336

                                                                       
Query: 181 ctggatgacgttgggccgagagcaatggatatccgttacacctgatggataacagtggtg 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ctggatggcgttgggccgagagcaatggatatccgttacacctgatggataacagtggtg 276

                                                                       
Query: 241 aatgatagaccacagtgatcttggagcagctgcacaagagcagaacttacaagtgtgctg 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aatgaaagaccacagtgatcttggagcagctgcacaagagcagaacttacaagtgtgctg 216

                          
Query: 301 ccctagggagcagga 315
           |||||||||||||||
Sbjct: 215 ccctagggagcagga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)