NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACTATGTACACCATGCTGGTCTCGAACTCAGAAATCTGCC
TGCCTCTGCCTCCCAAGGGCTGGGATTAAAGGCGTGCGCCACCACTGCCC
GGCTTATTCACATATTTTGAAACACTGATATTAGATTTACATACAATGTG
TTTGGGATTTCTCACGATTTACCATCTTATCATTTCAAATATTTCTTTCC
CTTAGAACTTTGACCTCCTCTCTATCTGCTCTTGTAATTACCCAATTTCC
ATGTTTACTGTGAGCCTGCCATATCTGTTGCTACCTTTTCACTTTCAATC
TAAGCTTTCACATTGACTAGTCAATATATTTTTAATTTTCTATTTCTTTG
TATTAGCTTTTTAGGAAAGTCTATAATTGTTATTGTTATTGGTATTGCTT
ATTTAGTCCACTTTTAATTCACCAAAGACTGTCAGCAGGCCTCAACTGCT
GGCCATACAAGTGGAATGGAATCAATTTATCTTCCTGTCCTGAATTAAAA
CTTGTTCAAAGTATATAAAAACCATGGCTTTCTTTTATGTTTCCAAAGGC
TTGTCTCATGCTTTATTCCCAGTTTAATATTCACAGTGAAAACTAAGCCT
TGGAGTTGCTGACTTTAACATGAGGCAAGCCCTAATTAATGTGGACAGAG
TATTTTATATTTTTGTTACTCAATATTTATATTT

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGACGAAATTCAAGCCAGTCC
TTCAGAGGTAAAGCGGGAGAGAGAGTAGGAGCAAAGAGGAAACATGGTGC
ACCAATTAAGCATACAGGCCTTTCCACAGGTCTTGAACCCGAGGAAAAAT
TAATGTCAGGGAAGAATACCTGGGGAGAGTTTGGAAGGAATGAGAAGGAA
AAAGAAAAGAAAAAAGATCGATCATAGGAGGTTTCTAGGAGAAGGAACTT
ATACCTGCCACTAGATGAGTTTAAGCTGCTAGCTCTTAATAGCTCAGAAT
CAGATGAAGGACTTAGCTCCTCTAGAGAAACGGACTTGGAGGAGGAAGCA
GTTTGTTACAAGGGAGAATGGTACCAGCAAGATAAAAAGCAAGCTACTCA
GTCCAGAAAAAGGCAAAAAGCAGCTGGCGAAAGCCAGCTTGCTGCTCAGC
CTCCGGACTGTCGGCTTCAGGGTCCTAGTGCACCTCAGCCCTATGTGCAG
AGGTACCATTCAGAGCCTTATGTGCAGAGGTATCATTCAGATTCATTCAT
TCCCAAAGAGGAACAGAGAAAAGTACCGCAAGCGTTCCCAGTTTTTGAAG
GAGCTGAAGGAAGACGTGTTCACGCTCTGGTAGAATATATACAGTTTAAG
GAGCTCGCAAAAACAATTCGCAATTTATGGATCCGCCCTTATTTTCCCTA
AACACAAATCCAAAAGGGTTGGGATCTT

Query= MSMg01no354_d11.b1 MSMg01no354_d11.b1 CHROMAT_FILE:
MSMg01no354_d11.b1 PHD_FILE: MSMg01no354_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:18 2005
         (597 letters)



>mm_chr1_3091953_3092954
          Length = 1002

 Score = 1073 bits (555), Expect = 0.0
 Identities = 586/599 (97%), Gaps = 5/599 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactatgtacaccatgctggtctcgaactcagaaatctgcctgcctctgcctcc 63
           |||| ||||| |||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 912 ggaactcactttgtagaccatgctggcctcgaactcagaaatctgcctgcctctgcctcc 853

                                                                       
Query: 64  caagggctgggattaaaggcgtgcgccaccactgcccggcttattcacatattttgaaac 123
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 caagtgctgggattaaaggcgtgcgccaccactgcccggcttattcacatattttgaaac 793

                                                                       
Query: 124 actgatattagatttacatacaatgtgtttgggatttctcacgatttaccatcttatcat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 actgatattagatttacatacaatgtgtttgggatttctcacgatttaccatcttatcat 733

                                                                       
Query: 184 ttcaaatatttctttcccttagaactt-----tgacctcctctctatctgctcttgtaat 238
           |||||||||||||||||||||||||||     | ||||||||||||||||||||||||||
Sbjct: 732 ttcaaatatttctttcccttagaacttagtcattacctcctctctatctgctcttgtaat 673

                                                                       
Query: 239 tacccaatttccatgtttactgtgagcctgccatatctgttgctaccttttcactttcaa 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tacccaatttccatgtttactgtgagcctgccatatctgttgctaccttttcactttcaa 613

                                                                       
Query: 299 tctaagctttcacattgactagtcaatatatttttaattttctatttctttgtattagct 358
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tctaagctttcacgttgactagtcaatatatttttaattttctatttctttgtattagct 553

                                                                       
Query: 359 ttttaggaaagtctataattgttattgttattggtattgcttatttagtccacttttaat 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ttttaggaaagtctataattgttattgttattggtattgcttatttagtccacttttaat 493

                                                                       
Query: 419 tcaccaaagactgtcagcaggcctcaactgctggccatacaagtggaatggaatcaattt 478
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 492 tcaccaaagactgtcagcaggcctcaactgctggccacacaagtggaatggaatcaattt 433

                                                                       
Query: 479 atcttcctgtcctgaattaaaacttgttcaaagtatataaaaaccatggctttcttttat 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 atcttcctgtcctgaattaaaacttgttcaaagtatataaaaaccatggctttcttttat 373

                                                                      
Query: 539 gtttccaaaggcttgtctcatgctttattcccagtttaatattcacagtgaaaactaag 597
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gtttccaaaggcttgtctcatgctttattcccagtttaatattcacagtgaaaactaag 314


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 1002
Length adjustment: 10
Effective length of query: 587
Effective length of database: 992
Effective search space:   582304
Effective search space used:   582304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)