NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGGGACTTCTGCATGTTAGATATACACTCTCACCCACAGAGAC
ACATCCCCAACTTGACCCTTTATTTTTCTCATTGGTCCTGTAGCTTTATT
GAGACTTCCAAGTTAGAATCCCATGCAAAGCCCCTAGATCATCTATGCTC
TAATATGGTTATTATAGTTTCATTCCTTCCTTGGTGTTTGAATACATTAT
CAACATGGGTGAGCTCAGATATTATTTTTATCTTTATTCTCTATGTATTC
CATAACGGAACCGTAAATTTTTCTTTAATGAATTTCTATAGTATTCATTA
ACGATTCTGGATAGTCCCATCTTGGATTTCTACAATCTTTTTCTGCTCAG
ATTACATTCTTTGAATATCTTAAGTGTAGCATCAAACCACCTTACAGCCT
TGAACTTTTCTTTTCTGGTTGTGTGTTTGGCCTGTATGTTTGCATGTGTG
TAGGTGTTCATGTACATATGCTTGTGGAATCCAGAGATTGATGTCAAATG
TCTTCCTCAGTTGTTCTATACCTTATTTAAAGACAGTGGAAACAGTTATT
CTCTGTTGAAACAGTTACTCACCAACTGCCTAGACTAGTCAGTAAGCTCT
AGATATCTTGCCTATCTCCATCTTCTGTGATAANGTTAGGGATGTGAGTG
ATTTAACGACACCTGTTTGTACACTGATACTAAACTCCAGTCCCTCTATC
TAT

GGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAACACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TAAAAAATTCAGGTGACAGCAGATGCTGGTGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGGAGTAACACATTCTCCAAGGAAACTCCCACAATATGGACTCCCTGATA
AGTGGATATTATTCCCCAACCTATGATACCCCAGAAATAAAATATTATTG
TGGTTACCCTGTGTCTTCTGATAAATGAGAATCGGAGGGGGGGCCCTTGC
CCCCCCTTTAATTTGTGAAAAATAACCN

Query= MSMg01no354_g17.b1 MSMg01no354_g17.b1 CHROMAT_FILE:
MSMg01no354_g17.b1 PHD_FILE: MSMg01no354_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:33 2005
         (561 letters)



>mm_chr1_156226009_156226969
          Length = 961

 Score = 1085 bits (561), Expect = 0.0
 Identities = 561/561 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgttagatatacactctcacccacagagacacatccccaacttgaccctttatttttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 catgttagatatacactctcacccacagagacacatccccaacttgaccctttatttttc 577

                                                                       
Query: 61  tcattggtcctgtagctttattgagacttccaagttagaatcccatgcaaagcccctaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tcattggtcctgtagctttattgagacttccaagttagaatcccatgcaaagcccctaga 517

                                                                       
Query: 121 tcatctatgctctaatatggttattatagtttcattccttccttggtgtttgaatacatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tcatctatgctctaatatggttattatagtttcattccttccttggtgtttgaatacatt 457

                                                                       
Query: 181 atcaacatgggtgagctcagatattatttttatctttattctctatgtattccataacgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 atcaacatgggtgagctcagatattatttttatctttattctctatgtattccataacgg 397

                                                                       
Query: 241 aaccgtaaatttttctttaatgaatttctatagtattcattaacgattctggatagtccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 aaccgtaaatttttctttaatgaatttctatagtattcattaacgattctggatagtccc 337

                                                                       
Query: 301 atcttggatttctacaatctttttctgctcagattacattctttgaatatcttaagtgta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 atcttggatttctacaatctttttctgctcagattacattctttgaatatcttaagtgta 277

                                                                       
Query: 361 gcatcaaaccaccttacagccttgaacttttcttttctggttgtgtgtttggcctgtatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gcatcaaaccaccttacagccttgaacttttcttttctggttgtgtgtttggcctgtatg 217

                                                                       
Query: 421 tttgcatgtgtgtaggtgttcatgtacatatgcttgtggaatccagagattgatgtcaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 tttgcatgtgtgtaggtgttcatgtacatatgcttgtggaatccagagattgatgtcaaa 157

                                                                       
Query: 481 tgtcttcctcagttgttctataccttatttaaagacagtggaaacagttattctctgttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 tgtcttcctcagttgttctataccttatttaaagacagtggaaacagttattctctgttg 97

                                
Query: 541 aaacagttactcaccaactgc 561
           |||||||||||||||||||||
Sbjct: 96  aaacagttactcaccaactgc 76


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space:   524001
Effective search space used:   524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)