Query= MSMg01no354_n20.b1 MSMg01no354_n20.b1 CHROMAT_FILE:
MSMg01no354_n20.b1 PHD_FILE: MSMg01no354_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:09 2005
(492 letters)
>mm_chr1_51985730_51986621
Length = 892
Score = 866 bits (448), Expect = 0.0
Identities = 480/500 (96%), Gaps = 15/500 (3%)
Strand = Plus / Plus
Query: 5 gaattcattggatacttcccatacttctattagacattctcaca---------------c 49
|||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 190 gaattcattggatacttcccatacttctattagacattctcacattagacattctcacac 249
Query: 50 cttgacgttagaaaattctcctttttgtagaaacagcggtgctcagctgatcacaatcag 109
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 250 cttgacgttagaaaattctcctttttgtagaaacagctgtgctcagctgatcacaatcag 309
Query: 110 ttcatcactgatgcttctttaacatgccataatagtttttctcttcacttcagagccaat 169
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ttcatcactaatgcttctttaacatgccataatagtttttctcttcacttcagagccaat 369
Query: 170 acatagattttcctcgtcttcttgcccaagtcaattcataagcacttttaatctatgaac 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 acatagattttcctcgtcttcttgcccaagtcaattcataagcacttttaatctatgaac 429
Query: 230 tttcaagctcgaaaagatgtattgggtcactaaatacttatgtcttgcttacacaggatt 289
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tttcaagctcaaaaagatgtattgggtcactaaatacttatgtcttgcttacacaggatt 489
Query: 290 gagagctcacaaaggttcaggatcaattatatttcatcttcccagtacttatttcacagc 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gagagctcacaaaggttcaggatcaattatatttcatcttcccagtacttatttcacagc 549
Query: 350 tgaacacttctcagaataacgaacacaagtccagtttctaacaagccatggcaaaggcca 409
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 550 tgaacacttctcagaataatgaacacaagtccagtttctgacaagccatggcaaaggcca 609
Query: 410 aatgaatgagcaatattagttaccctggacccacatgctctagcgagtgtgtgtgtgtgt 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 aatgaatgagcaatattagttaccctggacccacatgctctagcgagtgtgtgtgtgtgt 669
Query: 470 gtgtgtgtgtgtgtgtgtgt 489
||||||||||||||||||||
Sbjct: 670 gtgtgtgtgtgtgtgtgtgt 689
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no354_n20.g1 MSMg01no354_n20.g1 CHROMAT_FILE:
MSMg01no354_n20.g1 PHD_FILE: MSMg01no354_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:09 2005
(305 letters)
>mm_chr1_52142346_52143050
Length = 705
Score = 400 bits (207), Expect = e-116
Identities = 228/235 (97%)
Strand = Plus / Minus
Query: 1 ctcttatttattttgctagaaccctcaaactcaaaagctccattctatgtgcagtggctg 60
|||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||
Sbjct: 435 ctcttatttattttgctagaaccctccaactcaaaacctccattctatgtacagtggctg 376
Query: 61 ggaggaaagattcacttgaggttctgccttcagcagcgacttgaatcagaaaggagcatg 120
||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||
Sbjct: 375 ggaggaaagattcacttgaggttctgccttcagcagcaactcgaatcaggaaggagcatg 316
Query: 121 gctcaacttccatagggccatgggatatagtggtttcaaaggtgcaactgagacaatgaa 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gctcaacttccatagggccgtgggatatagtggtttcaaaggtgcaactgagacaatgaa 256
Query: 181 gagttcacaggaaggaaacatgaccggacattaaacctttgtggtgagtcatgtg 235
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gagttcacaggaaggaaacatgaccggacattaaacctttgtggtgagtcatgtg 201
Score = 114 bits (59), Expect = 6e-30
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 247 tctctctctctctctctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgt 305
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tctctctctctctctctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgt 66
Score = 107 bits (55), Expect = 1e-27
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 245 tctctctctctctctctctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgt 303
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 8 tctctctctctctctctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgt 66
Score = 74.2 bits (38), Expect = 1e-17
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 236 ctctctctctctctctctctctctctctctctctctctctctctct 281
|||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 125 ctctgtctctgtctctctctctctctctctctctctctctctctct 170
Score = 74.2 bits (38), Expect = 1e-17
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 237 tctctctctctctctctctctctctctctctctctctctctc 278
||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 130 tctctgtctctctctctctctctctctctctctctctctctc 171
Score = 74.2 bits (38), Expect = 1e-17
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 239 tctctctctctctctctctctctctctctctctctctctctc 280
||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 130 tctctgtctctctctctctctctctctctctctctctctctc 171
Score = 72.3 bits (37), Expect = 4e-17
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 237 tctctctctctctctctctctctctctctctctctctctctctct 281
||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 124 tctctgtctctgtctctctctctctctctctctctctctctctct 168
Score = 72.3 bits (37), Expect = 4e-17
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 236 ctctctctctctctctctctctctctctctctctctctctc 276
|||| ||||||||||||||||||||||||||||||||||||
Sbjct: 131 ctctgtctctctctctctctctctctctctctctctctctc 171
Score = 66.5 bits (34), Expect = 2e-15
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 236 ctctctctctctctctctctctctctctctctctctctctctctct 281
|||| ||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 119 ctctgtctctgtctctgtctctctctctctctctctctctctctct 164
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 11
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space: 206016
Effective search space used: 206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
